Conservation of cofitness between EX31_RS14255 and EX31_RS21180 in Rahnella sp. WP5

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS14255 ribonuclease E activity regulator RraA 1.0 EX31_RS21180 agmatine deiminase 0.52 6
Serratia liquefaciens MT49 0.95 IAI46_24585 ribonuclease E activity regulator RraA 0.21 IAI46_12735 agmatine deiminase family protein low > 86
Pectobacterium carotovorum WPP14 0.93 HER17_RS00840 ribonuclease E activity regulator RraA 0.70 HER17_RS00785 agmatine deiminase low > 75
Dickeya dianthicola 67-19 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA 0.66 HGI48_RS20520 agmatine deiminase low > 71
Dickeya dianthicola ME23 0.85 DZA65_RS21515 ribonuclease E activity regulator RraA 0.66 DZA65_RS21565 agmatine deiminase low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.67 DDA3937_RS00855 agmatine deiminase low > 74
Shewanella oneidensis MR-1 0.73 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.64 SO_0887 agmatine deiminase (RefSeq) low > 76
Shewanella sp. ANA-3 0.72 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.65 Shewana3_3465 agmatine deiminase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.66 Sama_2521 agmatine deiminase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.66 MIT1002_00164 Regulator of ribonuclease activity A 0.19 MIT1002_03760 Putative agmatine deiminase low > 70
Pseudomonas stutzeri RCH2 0.58 Psest_2315 RraA famliy 0.53 Psest_4291 agmatine deiminase low > 67
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00850 ribonuclease activity regulator protein RraA 0.56 AO353_11915 agmatine deiminase low > 101
Pseudomonas sp. S08-1 0.57 OH686_01650 Ribonuclease E inhibitor RraA 0.55 OH686_11505 agmatine deiminase low > 80
Pseudomonas putida KT2440 0.57 PP_2084 Putative regulator of ribonuclease activity 0.53 PP_0266 Agmatine deiminase low > 96
Pseudomonas sp. RS175 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.55 PFR28_04897 Agmatine deiminase low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_02815 ribonuclease activity regulator protein RraA 0.54 AO356_10030 Agmatine deiminase (EC 3.5.3.12) (from data) low > 104
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.54 Pf1N1B4_1661 Agmatine deiminase (EC 3.5.3.12) low > 87
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.54 Pf6N2E2_3876 Agmatine deiminase (EC 3.5.3.12) low > 103
Pseudomonas simiae WCS417 0.56 PS417_21010 ribonuclease activity regulator protein RraA 0.55 PS417_01340 agmatine deiminase low > 88
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2092 Protein of unknown function 1935 0.53 Psyr_4932 agmatine deiminase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2092 Protein of unknown function 1935 0.53 Psyr_4932 agmatine deiminase low > 86
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.55 PFLU_RS01435 agmatine deiminase low > 109
Pseudomonas fluorescens SBW25 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.55 PFLU_RS01435 agmatine deiminase low > 109
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.54 PfGW456L13_397 Agmatine deiminase (EC 3.5.3.12) low > 87
Marinobacter adhaerens HP15 0.48 HP15_2228 ribonuclease activity regulator protein RraA 0.23 HP15_2073 peptidyl-arginine deiminase family protein low > 73
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA 0.20 Xcc-8004.2375.1 Agmatine deiminase (EC 3.5.3.12) — —
Lysobacter sp. OAE881 0.42 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.23 ABIE51_RS09325 agmatine deiminase family protein — —
Azospirillum brasilense Sp245 0.41 AZOBR_RS17130 ribonuclease 0.35 AZOBR_RS08825 agmatine deiminase — —
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.27 GFF37 Similar to Agmatine deiminase — —
Azospirillum sp. SherDot2 0.39 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.37 MPMX19_04878 Agmatine deiminase low > 112

Not shown: 34 genomes with orthologs for EX31_RS14255 only; 20 genomes with orthologs for EX31_RS21180 only