Conservation of cofitness between EX31_RS21480 and EX31_RS13280 in Rahnella sp. WP5

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase 1.0 EX31_RS13280 LysR family transcriptional regulator 0.51 11
Pectobacterium carotovorum WPP14 0.69 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase 0.76 HER17_RS03705 LysR family transcriptional regulator low > 75
Serratia liquefaciens MT49 0.65 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase 0.81 IAI46_20525 LysR family transcriptional regulator low > 86
Dickeya dadantii 3937 0.63 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase 0.70 DDA3937_RS17430 LysR family transcriptional regulator 0.42 38
Dickeya dianthicola 67-19 0.62 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase 0.71 HGI48_RS17490 LysR family transcriptional regulator low > 71
Escherichia coli Nissle 1917 0.62 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase 0.74 ECOLIN_RS15935 DNA-binding transcriptional regulator LysR low > 55
Escherichia coli ECOR38 0.62 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.75 HEPCGN_19570 lysR DNA-binding transcriptional regulator LysR low > 87
Escherichia coli ECRC99 0.62 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 KEDOAH_08190 lysR DNA-binding transcriptional regulator LysR — —
Escherichia coli ECRC102 0.62 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 NIAGMN_17710 lysR DNA-binding transcriptional regulator LysR — —
Escherichia coli ECRC100 0.62 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 OKFHMN_19940 lysR DNA-binding transcriptional regulator LysR low > 80
Escherichia fergusonii Becca 0.62 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase 0.75 EFB2_01044 Octopine catabolism/uptake operon regulatory protein OccR low > 86
Escherichia coli ECRC62 0.62 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.75 BNILDI_10305 lysR DNA-binding transcriptional regulator LysR low > 75
Escherichia coli ECOR27 0.62 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.75 NOLOHH_11825 lysR DNA-binding transcriptional regulator LysR low > 75
Escherichia coli ECRC101 0.62 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 MCAODC_10465 lysR DNA-binding transcriptional regulator LysR 0.54 54
Escherichia coli ECRC98 0.62 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 JDDGAC_23605 lysR DNA-binding transcriptional regulator LysR low > 86
Enterobacter sp. TBS_079 0.60 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase 0.74 MPMX20_03706 Octopine catabolism/uptake operon regulatory protein OccR low > 85
Klebsiella michiganensis M5al 0.60 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase 0.72 BWI76_RS23365 LysR family transcriptional regulator low > 92
Escherichia coli BL21 0.60 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein 0.74 ECD_02687 transcriptional activator of lysA; autorepressor low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase 0.74 OHPLBJKB_00890 Octopine catabolism/uptake operon regulatory protein OccR low > 73
Escherichia coli BW25113 0.60 b2912 ygfA putative ligase (VIMSS) 0.74 b2839 lysR DNA-binding transcriptional dual regulator (NCBI) low > 76
Dickeya dianthicola ME23 0.59 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase 0.71 DZA65_RS18555 LysR family transcriptional regulator low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.71 GFF1324 Transcriptional activator protein LysR low > 78
Pantoea sp. MT58 0.56 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase 0.73 IAI47_03855 LysR family transcriptional regulator low > 76
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase 0.72 EX28DRAFT_2917 Transcriptional regulator low > 76
Erwinia tracheiphila SCR3 0.53 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase 0.69 LU632_RS06035 LysR family transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.17 Psyr_2536 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase 0.17 Psyr_2536 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_892 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.21 PfGW456L13_3120 LysR-family transcriptional regulator low > 87
Pseudomonas putida KT2440 0.25 PP_5203 5-formyltetrahydrofolate cyclo-ligase 0.49 PP_2078 transcriptional activator protein LysR low > 96
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.30 Pf6N2E2_1093 Transcriptional regulatory protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_12990 5-formyltetrahydrofolate cyclo-ligase 0.30 AO356_26100 LysR family transcriptional regulator low > 104
Sinorhizobium meliloti 1021 0.24 SMc03974 hypothetical protein 0.18 SM_b20582 LysR family transcriptional regulator low > 103
Caulobacter crescentus NA1000 0.19 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.23 CCNA_01693 LysR-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase 0.23 CCNA_01693 LysR-family transcriptional regulator low > 67
Azospirillum brasilense Sp245 0.18 AZOBR_RS09025 5-formyltetrahydrofolate cyclo-ligase 0.31 AZOBR_RS27080 transcriptional regulator low > 97
Herbaspirillum seropedicae SmR1 0.17 HSERO_RS21420 5-formyltetrahydrofolate cyclo-ligase 0.16 HSERO_RS07860 LysR family transcriptional regulator low > 78
Bosea sp. OAE506 0.16 ABIE41_RS09445 5-formyltetrahydrofolate cyclo-ligase 0.30 ABIE41_RS16445 LysR substrate-binding domain-containing protein low > 77
Ralstonia sp. UNC404CL21Col 0.15 ABZR87_RS04880 5-formyltetrahydrofolate cyclo-ligase 0.17 ABZR87_RS14270 LysR family transcriptional regulator low > 80
Castellaniella sp019104865 MT123 0.15 ABCV34_RS13555 5-formyltetrahydrofolate cyclo-ligase 0.21 ABCV34_RS08045 LysR substrate-binding domain-containing protein — —
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS28640 5-formyltetrahydrofolate cyclo-ligase 0.30 QEN71_RS33285 LysR substrate-binding domain-containing protein low > 153
Cupriavidus basilensis FW507-4G11 0.13 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase 0.29 RR42_RS29625 LysR family transcriptional regulator low > 128
Azospirillum sp. SherDot2 0.12 MPMX19_00693 5-formyltetrahydrofolate cyclo-ligase 0.30 MPMX19_02982 Octopine catabolism/uptake operon regulatory protein OccR low > 112

Not shown: 37 genomes with orthologs for EX31_RS21480 only; 10 genomes with orthologs for EX31_RS13280 only