Conservation of cofitness between EFB2_01128 and EFB2_01062 in Escherichia fergusonii Becca

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia fergusonii Becca 1.0 EFB2_01128 putative glucarate transporter 1.0 EFB2_01062 RecBCD enzyme subunit RecC 0.56 10
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00942 putative glucarate transporter 0.99 OHPLBJKB_00908 RecBCD enzyme subunit RecC low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.99 NOLOHH_11925 recC exodeoxyribonuclease V subunit gamma
Escherichia coli BL21 1.00 ECD_02634 putative D-glucarate transporter 0.99 ECD_02670 exonuclease V (RecBCD complex), gamma chain low > 61
Escherichia coli ECRC62 1.00 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.99 BNILDI_10405 recC exodeoxyribonuclease V subunit gamma low > 75
Escherichia coli ECOR38 1.00 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.99 HEPCGN_19295 recC exodeoxyribonuclease V subunit gamma low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.99 ECOLIN_RS15840 exodeoxyribonuclease V subunit gamma low > 55
Escherichia coli BW25113 1.00 b2789 gudP predicted D-glucarate transporter (NCBI) 0.99 b2822 recC exonuclease V (RecBCD complex), gamma chain (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.99 OKFHMN_20040 recC exodeoxyribonuclease V subunit gamma
Escherichia coli ECRC102 1.00 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.99 NIAGMN_17810 recC exodeoxyribonuclease V subunit gamma
Escherichia coli ECRC101 1.00 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.99 MCAODC_10565 recC exodeoxyribonuclease V subunit gamma
Escherichia coli ECRC98 1.00 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.99 JDDGAC_23705 recC exodeoxyribonuclease V subunit gamma
Escherichia coli ECRC99 1.00 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.99 KEDOAH_08090 recC exodeoxyribonuclease V subunit gamma
Klebsiella michiganensis M5al 0.98 BWI76_RS22835 MFS transporter 0.80 BWI76_RS23240 exonuclease V subunit gamma low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF4843 D-glucarate permease 0.89 GFF1303 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_2870 D-galactonate transporter 0.79 EX28DRAFT_2897 DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5)
Enterobacter sp. TBS_079 0.93 MPMX20_03659 putative glucarate transporter 0.78 MPMX20_03685 RecBCD enzyme subunit RecC low > 85
Rahnella sp. WP5 0.87 EX31_RS03160 MFS transporter 0.26 EX31_RS20740 exodeoxyribonuclease V subunit gamma
Erwinia tracheiphila SCR3 0.85 LU632_RS06310 MFS transporter 0.62 LU632_RS06180 recC exodeoxyribonuclease V subunit gamma
Pectobacterium carotovorum WPP14 0.84 HER17_RS04075 MFS transporter 0.61 HER17_RS16535 exodeoxyribonuclease V subunit gamma low > 75
Pantoea sp. MT58 0.83 IAI47_04080 MFS transporter 0.63 IAI47_03955 exodeoxyribonuclease V subunit gamma
Dickeya dadantii 3937 0.83 DDA3937_RS17055 MFS transporter 0.25 DDA3937_RS11085 exodeoxyribonuclease V subunit gamma
Dickeya dianthicola 67-19 0.82 HGI48_RS17110 MFS transporter 0.26 HGI48_RS11105 exodeoxyribonuclease V subunit gamma
Dickeya dianthicola ME23 0.82 DZA65_RS18185 MFS transporter 0.25 DZA65_RS11485 exodeoxyribonuclease V subunit gamma
Pseudomonas putida KT2440 0.69 PP_3600 glucarate transporter 0.30 PP_4674 ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS04245 MFS transporter 0.29 PFLU_RS25595 exodeoxyribonuclease V subunit gamma low > 109
Pseudomonas fluorescens SBW25 0.69 PFLU_RS04245 MFS transporter 0.29 PFLU_RS25595 exodeoxyribonuclease V subunit gamma low > 109
Pseudomonas sp. RS175 0.69 PFR28_00144 putative glucarate transporter 0.30 PFR28_00006 RecBCD enzyme subunit RecC low > 88
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_3297 D-galactarate permease 0.29 Pf6N2E2_3461 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) low > 103
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_05295 glucarate transporter 0.29 AO353_06050 exodeoxyribonuclease V subunit gamma low > 101
Pseudomonas simiae WCS417 0.68 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.28 PS417_23780 exodeoxyribonuclease V subunit gamma
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_07175 glucarate transporter 0.29 AO356_07920 exodeoxyribonuclease V subunit gamma low > 104
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_5043 D-galactarate permease 0.28 PfGW456L13_5152 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) low > 87
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_1108 D-galactarate permease 0.29 Pf1N1B4_1236 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4226 D-galactonate transporter 0.28 Psyr_0680 DNA helicase/exodeoxyribonuclease V, gamma subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4226 D-galactonate transporter 0.28 Psyr_0680 DNA helicase/exodeoxyribonuclease V, gamma subunit low > 86
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.1209.1 D-galactarate permease 0.18 Xcc-8004.5354.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS31870 MFS transporter 0.18 QEN71_RS23195 exodeoxyribonuclease V subunit gamma
Paraburkholderia graminis OAS925 0.64 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.26 ABIE53_000494 exodeoxyribonuclease V gamma subunit low > 113
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS24150 glucarate transporter 0.18 BPHYT_RS07970 exodeoxyribonuclease V subunit gamma
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.17 H281DRAFT_05085 DNA helicase/exodeoxyribonuclease V, gamma subunit low > 103

Not shown: 9 genomes with orthologs for EFB2_01128 only; 17 genomes with orthologs for EFB2_01062 only