Conservation of cofitness between ECD_03500 and ECD_04259 in Escherichia coli BL21

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03500 ribonuclease PH 1.0 ECD_04259 phosphopentomutase 0.58 6
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00059 Ribonuclease PH 1.00 OHPLBJKB_03678 Phosphopentomutase low > 73
Escherichia coli ECRC62 1.00 BNILDI_04045 rph ribonuclease PH 1.00 BNILDI_08045 deoB phosphopentomutase low > 75
Escherichia coli ECOR38 1.00 HEPCGN_14410 rph ribonuclease PH 1.00 HEPCGN_09225 deoB phosphopentomutase low > 87
Escherichia coli ECRC98 1.00 JDDGAC_19215 rph ribonuclease PH 1.00 JDDGAC_14815 deoB phosphopentomutase low > 86
Escherichia coli ECRC100 1.00 OKFHMN_15590 rph ribonuclease PH 1.00 OKFHMN_11220 deoB phosphopentomutase low > 80
Escherichia coli ECRC101 1.00 MCAODC_06100 rph ribonuclease PH 1.00 MCAODC_01735 deoB phosphopentomutase low > 87
Escherichia coli ECRC102 1.00 NIAGMN_13350 rph ribonuclease PH 1.00 NIAGMN_09070 deoB phosphopentomutase — —
Escherichia coli ECOR27 1.00 NOLOHH_07470 rph ribonuclease PH 1.00 NOLOHH_03550 deoB phosphopentomutase low > 75
Escherichia fergusonii Becca 1.00 EFB2_00170 Ribonuclease PH 1.00 EFB2_04063 Phosphopentomutase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_12555 rph ribonuclease PH 1.00 KEDOAH_16930 deoB phosphopentomutase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20755 ribonuclease PH 1.00 ECOLIN_RS25160 phosphopentomutase low > 55
Escherichia coli BW25113 0.93 b3643 rph ribonuclease PH (NCBI) 1.00 b4383 deoB phosphopentomutase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.94 GFF1045 Phosphopentomutase (EC 5.4.2.7) low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS27390 ribonuclease PH 0.94 BWI76_RS04140 phosphopentomutase low > 92
Enterobacter sp. TBS_079 0.92 MPMX20_00092 Ribonuclease PH 0.95 MPMX20_00682 Phosphopentomutase low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3893 ribonuclease PH 0.95 EX28DRAFT_3592 phosphopentomutase low > 76
Dickeya dadantii 3937 0.89 DDA3937_RS20540 ribonuclease PH 0.83 DDA3937_RS03145 phosphopentomutase — —
Dickeya dianthicola ME23 0.88 DZA65_RS00730 ribonuclease PH 0.83 DZA65_RS03315 phosphopentomutase low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS00675 ribonuclease PH 0.83 HGI48_RS03320 phosphopentomutase — —
Serratia liquefaciens MT49 0.87 IAI46_24850 ribonuclease PH 0.87 IAI46_02920 phosphopentomutase low > 86
Pantoea sp. MT58 0.87 IAI47_00595 ribonuclease PH 0.84 IAI47_03410 phosphopentomutase low > 76
Erwinia tracheiphila SCR3 0.86 LU632_RS22020 rph ribonuclease PH 0.84 LU632_RS02525 deoB phosphopentomutase low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS20855 ribonuclease PH 0.84 HER17_RS18125 phosphopentomutase low > 75
Rahnella sp. WP5 0.85 EX31_RS14505 ribonuclease PH 0.88 EX31_RS04055 phosphopentomutase low > 89
Shewanella amazonensis SB2B 0.77 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.69 Sama_0975 phosphopentomutase (RefSeq) low > 62
Shewanella loihica PV-4 0.77 Shew_3488 ribonuclease PH (RefSeq) 0.66 Shew_2813 phosphopentomutase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_01115 ribonuclease PH 0.76 CSW01_11900 phosphopentomutase low > 62
Shewanella oneidensis MR-1 0.76 SO4256 rph ribonuclease PH (NCBI ptt file) 0.69 SO1219 deoB Phosphopentomutase (EC 5.4.2.7) (from data) low > 76
Shewanella sp. ANA-3 0.76 Shewana3_3777 RNAse PH (RefSeq) 0.69 Shewana3_1043 phosphopentomutase (RefSeq) low > 73
Variovorax sp. SCN45 0.64 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.47 GFF4163 Phosphopentomutase (EC 5.4.2.7) low > 127
Agrobacterium fabrum C58 0.61 Atu0327 ribonuclease PH 0.55 Atu0137 phosphopentomutase — —
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS11745 ribonuclease PH 0.50 LRK54_RS13935 phosphopentomutase low > 59
Rhodanobacter denitrificans MT42 0.61 LRK55_RS11470 ribonuclease PH 0.50 LRK55_RS13655 phosphopentomutase low > 63
Bosea sp. OAE506 0.60 ABIE41_RS03295 ribonuclease PH 0.47 ABIE41_RS23990 phosphopentomutase low > 77
Sinorhizobium meliloti 1021 0.60 SMc01144 ribonuclease PH 0.56 SMc04119 phosphopentomutase low > 103
Rhizobium sp. OAE497 0.60 ABIE40_RS01640 ribonuclease PH 0.56 ABIE40_RS00835 phosphopentomutase low > 107
Dinoroseobacter shibae DFL-12 0.58 Dshi_3463 ribonuclease PH (RefSeq) 0.42 Dshi_0829 Phosphopentomutase (EC 5.4.2.7) (from data) low > 64
Phaeobacter inhibens DSM 17395 0.57 PGA1_c35030 ribonuclease PH 0.43 PGA1_c11950 phosphopentomutase DeoB low > 62

Not shown: 50 genomes with orthologs for ECD_03500 only; 0 genomes with orthologs for ECD_04259 only