Conservation of cofitness between ECD_00806 and ECD_03890 in Escherichia coli BL21

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 1.0 ECD_03890 transcriptional repressor 0.39 36
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 1.00 OHPLBJKB_04031 Transcriptional repressor IclR low > 73
Escherichia coli BW25113 1.00 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 1.00 b4018 iclR repressor of aceBA operon (VIMSS) low > 76
Escherichia coli ECRC62 1.00 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 BNILDI_06135 iclR glyoxylate bypass operon transcriptional repressor IclR low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.99 ECOLIN_RS23155 glyoxylate bypass operon transcriptional repressor IclR — —
Escherichia coli ECRC102 1.00 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NIAGMN_10995 iclR glyoxylate bypass operon transcriptional repressor IclR — —
Escherichia coli ECRC100 1.00 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 OKFHMN_13245 iclR glyoxylate bypass operon transcriptional repressor IclR low > 80
Escherichia coli ECRC99 1.00 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 KEDOAH_14915 iclR glyoxylate bypass operon transcriptional repressor IclR — —
Escherichia coli ECOR27 1.00 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 NOLOHH_05385 iclR glyoxylate bypass operon transcriptional repressor IclR low > 75
Escherichia coli ECRC101 1.00 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 MCAODC_03745 iclR glyoxylate bypass operon transcriptional repressor IclR low > 87
Escherichia coli ECOR38 1.00 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 HEPCGN_11890 iclR glyoxylate bypass operon transcriptional repressor IclR low > 87
Escherichia coli ECRC98 1.00 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 1.00 JDDGAC_16870 iclR glyoxylate bypass operon transcriptional repressor IclR low > 86
Escherichia fergusonii Becca 1.00 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 1.00 EFB2_04593 Transcriptional repressor IclR low > 86
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.90 EX28DRAFT_4327 transcriptional regulator, IclR family low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.91 MPMX20_00234 Transcriptional repressor IclR low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.94 GFF1356 Acetate operon repressor low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.89 BWI76_RS01680 transcriptional regulator IclR low > 92
Pantoea sp. MT58 0.75 IAI47_13090 serine hydrolase 0.78 IAI47_17995 glyoxylate bypass operon transcriptional repressor IclR low > 76
Pectobacterium carotovorum WPP14 0.72 HER17_RS12545 serine hydrolase 0.78 HER17_RS02305 glyoxylate bypass operon transcriptional repressor IclR low > 75
Serratia liquefaciens MT49 0.71 IAI46_08285 serine hydrolase 0.78 IAI46_23160 glyoxylate bypass operon transcriptional repressor IclR low > 86
Dickeya dadantii 3937 0.68 DDA3937_RS09420 serine hydrolase 0.76 DDA3937_RS19045 glyoxylate bypass operon transcriptional repressor IclR low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS09435 serine hydrolase 0.75 HGI48_RS19135 glyoxylate bypass operon transcriptional repressor IclR low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.75 DZA65_RS20255 glyoxylate bypass operon transcriptional repressor IclR low > 75
Rahnella sp. WP5 0.65 EX31_RS09695 D-alanyl-D-alanine carboxypeptidase 0.77 EX31_RS11755 glyoxylate bypass operon transcriptional repressor IclR low > 89
Pseudomonas putida KT2440 0.42 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.17 PP_2601 Transcriptional regulator, IclR family low > 96
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.19 PFR28_01464 Pca regulon regulatory protein low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.20 PFLU_RS17460 IclR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.20 PFLU_RS17460 IclR family transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.41 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.19 PS417_15475 IclR family transcriptional regulator low > 88
Pseudomonas stutzeri RCH2 0.41 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.20 Psest_3780 Transcriptional regulator low > 67
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.16 AO353_06220 IclR family transcriptional regulator low > 101
Variovorax sp. SCN45 0.37 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.23 GFF1520 Transcriptional regulator, IclR family low > 127
Castellaniella sp019104865 MT123 0.36 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.20 ABCV34_RS07905 IclR family transcriptional regulator low > 48
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.21 QEN71_RS35560 IclR family transcriptional regulator low > 153
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS02415 cytochrome C550 0.22 BPHYT_RS21735 IclR family transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.35 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.21 ABIE53_001884 IclR family acetate operon transcriptional repressor low > 113
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.21 H281DRAFT_02570 transcriptional regulator, IclR family low > 103
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS01680 cytochrome C550 0.20 RR42_RS34320 IclR family transcriptional regulator low > 128
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.21 ABID97_RS29345 IclR family transcriptional regulator low > 91
Azospirillum sp. SherDot2 0.29 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.34 MPMX19_04433 Transcriptional repressor IclR — —
Bosea sp. OAE506 0.27 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.18 ABIE41_RS16300 IclR family transcriptional regulator C-terminal domain-containing protein — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.32 AZOBR_RS31930 transcriptional regulator — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.35 Dshi_0886 transcriptional regulator, IclR family (RefSeq) — —
Rhizobium sp. OAE497 0.21 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein 0.39 ABIE40_RS25215 HTH-type transcriptional regulator BhcR low > 107

Not shown: 30 genomes with orthologs for ECD_00806 only; 1 genomes with orthologs for ECD_03890 only