Conservation of cofitness between ECD_00971 and ECD_03885 in Escherichia coli BL21

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 1.0 ECD_03885 homoserine O-transsuccinylase low > 61
Escherichia coli BW25113 1.00 b0967 yccW predicted methyltransferase (RefSeq) 1.00 b4013 metA homoserine O-succinyltransferase (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 ECOLIN_RS25515 homoserine O-succinyltransferase — —
Escherichia coli ECOR27 0.99 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 NOLOHH_05420 metA homoserine O-succinyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.99 OHPLBJKB_04037 Homoserine O-succinyltransferase low > 73
Escherichia coli ECOR38 0.99 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 HEPCGN_11915 metA homoserine O-succinyltransferase low > 87
Escherichia coli ECRC100 0.98 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 OKFHMN_13275 metA homoserine O-succinyltransferase low > 80
Escherichia coli ECRC62 0.98 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 BNILDI_06100 metA homoserine O-succinyltransferase low > 75
Escherichia coli ECRC98 0.98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 JDDGAC_16900 metA homoserine O-succinyltransferase low > 86
Escherichia coli ECRC99 0.98 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 KEDOAH_14885 metA homoserine O-succinyltransferase — —
Escherichia coli ECRC101 0.98 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 MCAODC_03775 metA homoserine O-succinyltransferase low > 87
Escherichia coli ECRC102 0.98 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 NIAGMN_11025 metA homoserine O-succinyltransferase — —
Escherichia fergusonii Becca 0.98 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 1.00 EFB2_04597 Homoserine O-succinyltransferase low > 86
Enterobacter asburiae PDN3 0.95 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.94 EX28DRAFT_4331 homoserine O-succinyltransferase (EC 2.3.1.46) low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.93 MPMX20_00230 Homoserine O-succinyltransferase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF3258 LSU m5C1962 methyltransferase RlmI 0.96 GFF1350 Homoserine O-succinyltransferase (EC 2.3.1.46) low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.94 BWI76_RS01655 homoserine O-succinyltransferase low > 92
Pantoea sp. MT58 0.87 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.85 IAI47_18015 homoserine O-succinyltransferase low > 76
Serratia liquefaciens MT49 0.85 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.83 IAI46_23200 homoserine O-succinyltransferase low > 86
Erwinia tracheiphila SCR3 0.83 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.86 LU632_RS22410 metA homoserine O-succinyltransferase low > 74
Rahnella sp. WP5 0.82 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.82 EX31_RS11735 homoserine O-succinyltransferase low > 89
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.66 CSW01_08100 homoserine O-succinyltransferase low > 62
Shewanella amazonensis SB2B 0.61 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.57 Sama_1374 homoserine O-succinyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.60 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.56 Shewana3_2772 homoserine O-succinyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.56 SO1676 metA homoserine O-succinyltransferase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.56 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.56 MIT1002_01112 Homoserine O-succinyltransferase low > 70
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.36 QEN71_RS42530 homoserine O-succinyltransferase low > 153
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase 0.48 HMPREF1078_RS10000 homoserine O-succinyltransferase low > 61
Bacteroides ovatus ATCC 8483 0.32 BACOVA_05134 hypothetical protein 0.51 BACOVA_03007 homoserine O-succinyltransferase low > 94
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase 0.49 ABI39_RS10360 homoserine O-succinyltransferase low > 72
Bacteroides thetaiotaomicron VPI-5482 0.31 BT4331 conserved hypothetical protein (NCBI ptt file) 0.50 BT2413 homoserine O-succinyltransferase (NCBI ptt file) 0.48 40
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase 0.49 HMPREF1181_RS00105 homoserine O-succinyltransferase low > 56
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase 0.50 HMPREF1058_RS14680 homoserine O-succinyltransferase 0.56 8
Azospirillum brasilense Sp245 0.27 AZOBR_RS01190 SAM-dependent methyltransferase 0.39 AZOBR_RS14010 homoserine O-succinyltransferase low > 97
Phaeobacter inhibens DSM 17395 0.20 PGA1_c19990 ribosomal RNA large subunit methyltransferase I 0.42 PGA1_c14560 homoserine O-succinyltransferase MetA low > 62
Dinoroseobacter shibae DFL-12 0.20 Dshi_1771 hypothetical protein (RefSeq) 0.40 Dshi_1593 Homoserine O-succinyltransferase (RefSeq) — —

Not shown: 46 genomes with orthologs for ECD_00971 only; 10 genomes with orthologs for ECD_03885 only