Conservation of cofitness between ECD_02518 and ECD_03033 in Escherichia coli BL21

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 1.0 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.61 7
Escherichia coli ECRC98 0.99 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB low > 86
Escherichia coli ECRC102 0.99 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC100 0.99 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC101 0.99 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB low > 87
Escherichia coli ECRC99 0.99 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli BW25113 0.99 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 1.00 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 1.00 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia fergusonii Becca 0.99 EFB2_01268 4-aminobutyrate aminotransferase GabT 1.00 EFB2_00657 tRNA pseudouridine synthase B low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 1.00 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Escherichia coli ECRC62 0.99 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli ECOR38 0.98 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.90 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.95 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 78
Pseudomonas sp. S08-1 0.77 OH686_11880 4-aminobutyrate transaminase 0.48 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Pseudomonas stutzeri RCH2 0.76 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.50 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas sp. RS175 0.74 PFR28_04756 5-aminovalerate aminotransferase DavT 0.49 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.49 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pseudomonas fluorescens SBW25 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.49 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_10715 4-aminobutyrate aminotransferase 0.49 AO356_07400 pseudouridine synthase low > 104
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.49 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas putida KT2440 0.73 PP_0214 4-aminobutyrate aminotransferase 0.48 PP_4710 tRNA pseudouridine 55 synthase 0.31 24
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.49 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.49 AO353_05550 pseudouridine synthase low > 101
Pseudomonas simiae WCS417 0.73 PS417_00900 4-aminobutyrate aminotransferase 0.48 PS417_23960 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.49 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.48 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.48 Psyr_4178 tRNA pseudouridine synthase B low > 86
Shewanella amazonensis SB2B 0.67 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) 0.66 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Shewanella sp. ANA-3 0.66 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) 0.63 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Variovorax sp. OAS795 0.64 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase 0.36 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB low > 91
Acidovorax sp. GW101-3H11 0.62 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.35 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 79
Shewanella loihica PV-4 0.51 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) 0.60 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Rhodopseudomonas palustris CGA009 0.50 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase 0.32 TX73_002255 tRNA pseudouridine(55) synthase TruB low > 86
Marinobacter adhaerens HP15 0.50 HP15_3708 4-aminobutyrate aminotransferase 0.48 HP15_3065 tRNA pseudouridine synthase B low > 73
Lysobacter sp. OAE881 0.25 ABIE51_RS02780 aspartate aminotransferase family protein 0.36 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB low > 62

Not shown: 1 genomes with orthologs for ECD_02518 only; 48 genomes with orthologs for ECD_03033 only