Conservation of cofitness between ECD_02518 and ECD_02836 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 1.0 ECD_02836 putative type II secretion protein GspF 0.56 28
Escherichia coli ECRC98 0.99 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.52 JDDGAC_30305 gspF type II secretion system inner membrane protein GspF low > 86
Escherichia coli ECRC101 0.99 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.52 MCAODC_15275 gspF type II secretion system inner membrane protein GspF low > 87
Escherichia coli ECRC102 0.99 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.52 NIAGMN_28595 gspF type II secretion system inner membrane protein GspF — —
Escherichia coli ECRC100 0.99 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.52 OKFHMN_00275 gspF type II secretion system inner membrane protein GspF low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 0.98 OHPLBJKB_00741 Type II secretion system protein F low > 73
Escherichia fergusonii Becca 0.99 EFB2_01268 4-aminobutyrate aminotransferase GabT 1.00 EFB2_00847 Type II secretion system protein F low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 0.99 ECOLIN_RS17075 type II secretion system inner membrane protein GspF low > 55
Escherichia coli ECOR27 0.99 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 NOLOHH_10985 gspF general secretion pathway protein F low > 75
Escherichia coli ECOR38 0.98 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.99 HEPCGN_18060 gspF general secretion pathway protein F low > 87
Pseudomonas sp. S08-1 0.77 OH686_11880 4-aminobutyrate transaminase 0.40 OH686_11780 type II secretion system protein F — —
Pseudomonas stutzeri RCH2 0.76 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.44 Psest_4201 general secretion pathway protein F low > 67
Pseudomonas sp. RS175 0.74 PFR28_04756 5-aminovalerate aminotransferase DavT 0.32 PFR28_01752 Type II secretion system protein F low > 88
Pseudomonas fluorescens SBW25 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.34 PFLU_RS11900 type II secretion system protein GspF low > 109
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_10715 4-aminobutyrate aminotransferase 0.37 AO356_09335 type II secretion system protein GspF low > 104
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.34 PFLU_RS11900 type II secretion system protein GspF low > 109
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.37 Pf6N2E2_3744 General secretion pathway protein F low > 103
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.39 PfGW456L13_264 General secretion pathway protein F low > 87
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.39 AO353_12555 type II secretion system protein GspF low > 101
Pseudomonas simiae WCS417 0.73 PS417_00900 4-aminobutyrate aminotransferase 0.34 PS417_11305 general secretion pathway protein GspF low > 88
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.27 Pf1N1B4_2841 Type IV fimbrial assembly protein PilC low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.27 Psyr_0797 type II secretion system protein low > 86
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.27 Psyr_0797 type II secretion system protein low > 86
Shewanella amazonensis SB2B 0.67 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) 0.53 Sama_0171 general secretion pathway protein F (RefSeq) low > 62
Shewanella sp. ANA-3 0.66 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) 0.54 Shewana3_0153 general secretion pathway protein F (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) 0.52 SO0168 gspF general secretion pathway protein F (NCBI ptt file) low > 76
Variovorax sp. OAS795 0.64 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase 0.31 ABID97_RS06940 type II secretion system inner membrane protein GspF low > 91
Acidovorax sp. GW101-3H11 0.62 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.31 Ac3H11_4054 General secretion pathway protein F / Type II secretory pathway, component PulF low > 79
Shewanella loihica PV-4 0.51 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) 0.54 Shew_3617 general secretion pathway protein F (RefSeq) low > 60
Marinobacter adhaerens HP15 0.50 HP15_3708 4-aminobutyrate aminotransferase 0.43 HP15_1603 general secretion pathway protein F low > 73
Lysobacter sp. OAE881 0.25 ABIE51_RS02780 aspartate aminotransferase family protein 0.26 ABIE51_RS04810 type II secretion system F family protein low > 62

Not shown: 6 genomes with orthologs for ECD_02518 only; 28 genomes with orthologs for ECD_02836 only