Conservation of cofitness between ECD_00354 and ECD_00081 in Escherichia coli BL21

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00354 tRNA-guanine transglycosylase 1.0 ECD_00081 transcriptional repressor-activator for carbon metabolism low > 61
Escherichia coli Nissle 1917 1.00 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 1.00 ECOLIN_RS00430 catabolite repressor/activator — —
Escherichia coli ECRC99 1.00 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 KEDOAH_17470 cra catabolite repressor/activator — —
Escherichia coli ECRC101 1.00 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 MCAODC_01200 cra catabolite repressor/activator low > 87
Escherichia coli BW25113 1.00 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 1.00 b0080 fruR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli ECOR27 1.00 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 NOLOHH_03030 cra catabolite repressor/activator low > 75
Escherichia fergusonii Becca 1.00 EFB2_03651 Queuine tRNA-ribosyltransferase 1.00 EFB2_03967 Catabolite repressor/activator low > 86
Escherichia coli ECRC100 1.00 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 OKFHMN_10685 cra catabolite repressor/activator low > 80
Escherichia coli ECRC98 1.00 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 JDDGAC_14280 cra catabolite repressor/activator low > 86
Escherichia coli ECRC62 1.00 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 BNILDI_08580 cra catabolite repressor/activator low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 1.00 OHPLBJKB_03579 Catabolite repressor/activator low > 73
Escherichia coli ECRC102 1.00 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 NIAGMN_08535 cra catabolite repressor/activator — —
Escherichia coli ECOR38 1.00 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 1.00 HEPCGN_08665 cra catabolite repressor/activator low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.99 GFF158 Fructose repressor FruR, LacI family low > 78
Enterobacter sp. TBS_079 0.98 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.98 MPMX20_00773 Catabolite repressor/activator 0.35 42
Enterobacter asburiae PDN3 0.98 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.98 EX28DRAFT_3675 transcriptional regulator, LacI family low > 76
Klebsiella michiganensis M5al 0.98 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.97 BWI76_RS04705 DNA-binding transcriptional regulator FruR — —
Pantoea sp. MT58 0.95 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.89 IAI47_15980 catabolite repressor/activator 0.31 10
Dickeya dadantii 3937 0.92 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.91 DDA3937_RS18095 catabolite repressor/activator low > 74
Dickeya dianthicola ME23 0.92 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.91 DZA65_RS19175 catabolite repressor/activator low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.91 HGI48_RS18030 catabolite repressor/activator 0.61 12
Pectobacterium carotovorum WPP14 0.92 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.87 HER17_RS03105 catabolite repressor/activator low > 75
Rahnella sp. WP5 0.91 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.89 EX31_RS03655 catabolite repressor/activator low > 89
Serratia liquefaciens MT49 0.91 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.91 IAI46_03385 catabolite repressor/activator low > 86
Erwinia tracheiphila SCR3 0.91 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.89 LU632_RS02900 cra catabolite repressor/activator low > 74
Vibrio cholerae E7946 ATCC 55056 0.85 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.39 CSW01_16835 catabolite repressor/activator low > 62
Pseudomonas stutzeri RCH2 0.72 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.39 Psest_3356 D-fructose-responsive transcription factor low > 67
Pseudomonas sp. RS175 0.72 PFR28_00277 Queuine tRNA-ribosyltransferase 0.39 PFR28_00104 Catabolite repressor/activator low > 88
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.37 PfGW456L13_5077 Fructose repressor FruR, LacI family low > 87
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_15790 queuine tRNA-ribosyltransferase 0.38 AO353_05490 transcriptional regulator — —
Pseudomonas putida KT2440 0.72 PP_0833 queuine tRNA-ribosyltransferase 0.38 PP_0792 catabolite repressor-activator, DNA-binding transcriptional dual regulator low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1228 tRNA-guanine transglycosylase 0.36 Psyr_0820 transcriptional regulator, LacI family — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1228 tRNA-guanine transglycosylase 0.36 Psyr_0820 transcriptional regulator, LacI family — —
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.38 Pf1N1B4_1147 Fructose repressor FruR, LacI family low > 87
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.37 Pf6N2E2_3340 Fructose repressor FruR, LacI family low > 103
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_06690 queuine tRNA-ribosyltransferase 0.38 AO356_07340 transcriptional regulator low > 104
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.36 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas simiae WCS417 0.71 PS417_23245 queuine tRNA-ribosyltransferase 0.36 PS417_03960 transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.36 PFLU_RS04005 catabolite repressor/activator low > 109
Sinorhizobium meliloti 1021 0.50 SMc01206 queuine tRNA-ribosyltransferase 0.14 SM_b20483 catabolite repressor protein low > 103
Rhizobium sp. OAE497 0.49 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.13 ABIE40_RS24355 LacI family DNA-binding transcriptional regulator low > 107
Agrobacterium fabrum C58 0.48 Atu1677 queuine tRNA-ribosyltransferase 0.15 Atu4743 LacI family transcriptional regulator low > 89
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.20 CA265_RS16295 LacI family transcriptional regulator low > 88

Not shown: 57 genomes with orthologs for ECD_00354 only; 0 genomes with orthologs for ECD_00081 only