Conservation of cofitness between Dsui_1335 and Dsui_0899 in Dechlorosoma suillum PS

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_1335 metalloendopeptidase-like membrane protein 1.0 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.74 3
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS02015 peptidase M23 0.48 HSERO_RS21530 cytochrome C550 0.70 3
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS02665 peptidase 0.50 RR42_RS01680 cytochrome C550 low > 128
Castellaniella sp019104865 MT123 0.34 ABCV34_RS10570 peptidoglycan DD-metalloendopeptidase family protein 0.46 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.86 3
Acidovorax sp. GW101-3H11 0.34 Ac3H11_3056 Peptidase, M23/M37 family 0.45 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Variovorax sp. SCN45 0.33 GFF2065 Peptidase, M23/M37 family 0.47 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.62 88
Variovorax sp. OAS795 0.33 ABID97_RS24965 peptidoglycan DD-metalloendopeptidase family protein 0.47 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.42 56
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1677 Peptidase, M23/M37 family 0.45 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Pseudomonas stutzeri RCH2 0.29 Psest_3636 Membrane proteins related to metalloendopeptidases 0.48 Psest_0516 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_1236 Cell wall endopeptidase, family M23/M37 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_15710 oapA peptidase M23 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.4877.1 Membrane proteins related to metalloendopeptidases 0.40 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.80 1
Rhodanobacter denitrificans MT42 0.27 LRK55_RS08745 peptidoglycan DD-metalloendopeptidase family protein 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS09215 peptidoglycan DD-metalloendopeptidase family protein 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.85 1
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15670 peptidoglycan DD-metalloendopeptidase family protein 0.42 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Shewanella loihica PV-4 0.25 Shew_1021 peptidase M23B (RefSeq) 0.36 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.52 15
Lysobacter sp. OAE881 0.23 ABIE51_RS00035 peptidoglycan DD-metalloendopeptidase family protein 0.42 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.98 1
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_03310 peptidase M23 0.37 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Serratia liquefaciens MT49 0.19 IAI46_14600 murein DD-endopeptidase MepM 0.36 IAI46_08285 serine hydrolase low > 86
Escherichia coli BW25113 0.17 b1856 yebA orf, hypothetical protein (VIMSS) 0.37 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli ECRC99 0.17 KEDOAH_01795 mepM murein DD-endopeptidase MepM 0.37 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC62 0.17 BNILDI_15540 mepM murein DD-endopeptidase MepM 0.37 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECOR27 0.17 NOLOHH_16750 mepM murein DD-endopeptidase MepM 0.37 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 57
Escherichia coli ECRC101 0.17 OKFHMN_26310 mepM murein DD-endopeptidase MepM 0.37 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC98 0.17 JDDGAC_00885 mepM murein DD-endopeptidase MepM 0.37 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC102 0.17 NIAGMN_01750 mepM murein DD-endopeptidase MepM 0.37 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_01872 Murein DD-endopeptidase MepM 0.37 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli ECOR38 0.17 HEPCGN_04715 mepM murein DD-endopeptidase MepM 0.37 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 85
Escherichia coli BL21 0.17 ECD_01827 murein DD-endopeptidase, space-maker hydrolase, septation protein 0.37 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 60
Escherichia coli Nissle 1917 0.17 ECOLIN_RS10340 murein DD-endopeptidase MepM 0.37 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia fergusonii Becca 0.17 EFB2_02086 Murein DD-endopeptidase MepM 0.37 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli ECRC101 0.17 MCAODC_19095 mepM murein DD-endopeptidase MepM 0.37 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Klebsiella michiganensis M5al 0.16 BWI76_RS18125 murein DD-endopeptidase MepM 0.38 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92

Not shown: 2 genomes with orthologs for Dsui_1335 only; 50 genomes with orthologs for Dsui_0899 only