Conservation of cofitness between CSW01_07480 and CSW01_14510 in Vibrio cholerae E7946 ATCC 55056

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 1.0 CSW01_14510 oxidoreductase 0.72 2
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS04640 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.48 PagCFBP13505_RS05760 oxidoreductase low > 74
Escherichia coli ECOR27 0.57 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 NOLOHH_18090 ydgJ Uncharacterized oxidoreductase YdgJ low > 76
Escherichia coli ECRC62 0.57 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 BNILDI_16880 ydgJ Uncharacterized oxidoreductase YdgJ low > 75
Escherichia coli ECRC100 0.57 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 OKFHMN_27575 ydgJ Uncharacterized oxidoreductase YdgJ low > 79
Escherichia coli ECRC102 0.57 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 NIAGMN_00490 ydgJ Uncharacterized oxidoreductase YdgJ low > 80
Escherichia coli ECRC99 0.57 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 KEDOAH_00530 ydgJ Uncharacterized oxidoreductase YdgJ — —
Escherichia coli ECRC101 0.57 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 MCAODC_17835 ydgJ Uncharacterized oxidoreductase YdgJ low > 88
Escherichia fergusonii Becca 0.57 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L 0.47 EFB2_02368 putative oxidoreductase YdgJ low > 86
Escherichia coli ECOR38 0.57 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 HEPCGN_05955 ydgJ Uncharacterized oxidoreductase YdgJ low > 88
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 ECOLIN_RS09060 oxidoreductase — —
Escherichia coli BW25113 0.57 b0948 ycbY predicted methyltransferase (NCBI) 0.47 b1624 b1624 orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L 0.47 OHPLBJKB_02102 putative oxidoreductase YdgJ low > 74
Escherichia coli ECRC98 0.57 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.47 JDDGAC_02165 ydgJ Uncharacterized oxidoreductase YdgJ low > 87
Escherichia coli BL21 0.57 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent 0.47 ECD_01593 putative oxidoreductase low > 61
Pantoea sp. MT58 0.57 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.48 IAI47_10370 oxidoreductase low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 HER17_RS10790 oxidoreductase low > 75
Serratia liquefaciens MT49 0.56 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.43 IAI46_11530 oxidoreductase low > 86
Dickeya dianthicola 67-19 0.56 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 HGI48_RS10615 oxidoreductase low > 71
Dickeya dianthicola ME23 0.56 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 DZA65_RS11095 oxidoreductase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.49 GFF1812 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) low > 78
Enterobacter sp. TBS_079 0.56 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L 0.47 MPMX20_02014 putative oxidoreductase YdgJ low > 85
Dickeya dadantii 3937 0.56 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 DDA3937_RS10615 oxidoreductase low > 74
Erwinia amylovora T8 0.55 OLJFJH_15975 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 OLJFJH_14315 oxidoreductase low > 58
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase 0.49 EX28DRAFT_1619 Predicted dehydrogenases and related proteins low > 76
Rahnella sp. WP5 0.55 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.49 EX31_RS06850 oxidoreductase low > 89
Klebsiella michiganensis M5al 0.55 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase 0.49 BWI76_RS16330 oxidoreductase low > 92
Klebsiella pneumoniae MKP103 0.55 KDGMDA_18160 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 KDGMDA_23275 oxidoreductase low > 95
Alteromonas macleodii MIT1002 0.44 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L 0.40 MIT1002_03898 putative oxidoreductase YdgJ low > 70
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.26 Psyr_3266 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.26 Psyr_3266 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal low > 86
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_04331 Ribosomal RNA large subunit methyltransferase K/L 0.25 GEMAOFIL_02657 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW low > 93
Pseudomonas aeruginosa PA14 0.42 IKLFDK_15510 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.37 IKLFDK_27750 dehydrogenase low > 100
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.27 Pf1N1B4_4282 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) low > 87
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.26 PFLU_RS12615 oxidoreductase low > 109
Pseudomonas fluorescens SBW25 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.26 PFLU_RS12615 oxidoreductase low > 109
Pseudomonas simiae WCS417 0.41 PS417_20930 50S rRNA methyltransferase 0.25 PS417_11880 oxidoreductase low > 88
Pseudomonas sp. RS175 0.41 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L 0.24 PFR28_02419 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW low > 88
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_00775 50S rRNA methyltransferase 0.26 AO353_21375 oxidoreductase low > 101
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.23 Pf6N2E2_519 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) low > 103
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_02605 50S rRNA methyltransferase 0.24 AO356_23195 oxidoreductase low > 104
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.39 Xcc-8004.927.1 Nucleoside-diphosphate-sugar epimerases low > 74
Lysobacter sp. OAE881 0.37 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.33 ABIE51_RS09990 oxidoreductase low > 62

Not shown: 23 genomes with orthologs for CSW01_07480 only; 24 genomes with orthologs for CSW01_14510 only