Conservation of cofitness between CSW01_02815 and CSW01_14510 in Vibrio cholerae E7946 ATCC 55056

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02815 tRNA pseudouridine(13) synthase TruD 1.0 CSW01_14510 oxidoreductase 0.55 18
Serratia liquefaciens MT49 0.39 IAI46_03765 tRNA pseudouridine(13) synthase TruD 0.43 IAI46_11530 oxidoreductase low > 86
Dickeya dadantii 3937 0.38 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD 0.46 DDA3937_RS10615 oxidoreductase low > 74
Dickeya dianthicola 67-19 0.37 HGI48_RS16960 tRNA pseudouridine(13) synthase TruD 0.46 HGI48_RS10615 oxidoreductase low > 71
Dickeya dianthicola ME23 0.37 DZA65_RS18035 tRNA pseudouridine(13) synthase TruD 0.46 DZA65_RS11095 oxidoreductase low > 75
Rahnella sp. WP5 0.37 EX31_RS07845 tRNA pseudouridine(13) synthase TruD 0.49 EX31_RS06850 oxidoreductase low > 89
Erwinia amylovora T8 0.37 OLJFJH_09360 tRNA pseudouridine(13) synthase TruD 0.46 OLJFJH_14315 oxidoreductase low > 58
Escherichia coli ECRC62 0.36 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD 0.47 BNILDI_16880 ydgJ Uncharacterized oxidoreductase YdgJ low > 75
Escherichia coli BW25113 0.36 b2745 truD tRNA pseudouridine synthase D (NCBI) 0.47 b1624 b1624 orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00988 tRNA pseudouridine synthase D 0.47 OHPLBJKB_02102 putative oxidoreductase YdgJ low > 73
Pectobacterium carotovorum WPP14 0.36 HER17_RS04335 tRNA pseudouridine(13) synthase TruD 0.46 HER17_RS10790 oxidoreductase low > 75
Escherichia coli BL21 0.36 ECD_02595 tRNA(Glu) pseudouridine(13) synthase 0.47 ECD_01593 putative oxidoreductase low > 61
Escherichia coli ECOR27 0.36 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD 0.47 NOLOHH_18090 ydgJ Uncharacterized oxidoreductase YdgJ low > 75
Escherichia coli ECOR38 0.36 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD 0.47 HEPCGN_05955 ydgJ Uncharacterized oxidoreductase YdgJ low > 87
Escherichia coli ECRC99 0.36 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD 0.47 KEDOAH_00530 ydgJ Uncharacterized oxidoreductase YdgJ — —
Escherichia coli ECRC100 0.36 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD 0.47 OKFHMN_27575 ydgJ Uncharacterized oxidoreductase YdgJ low > 80
Escherichia coli ECRC98 0.36 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD 0.47 JDDGAC_02165 ydgJ Uncharacterized oxidoreductase YdgJ low > 86
Escherichia coli ECRC102 0.36 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD 0.47 NIAGMN_00490 ydgJ Uncharacterized oxidoreductase YdgJ — —
Escherichia coli ECRC101 0.36 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD 0.47 MCAODC_17835 ydgJ Uncharacterized oxidoreductase YdgJ low > 87
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family 0.49 EX28DRAFT_1619 Predicted dehydrogenases and related proteins low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.49 GFF1812 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) low > 78
Escherichia coli Nissle 1917 0.36 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD 0.47 ECOLIN_RS09060 oxidoreductase — —
Escherichia fergusonii Becca 0.36 EFB2_01165 tRNA pseudouridine synthase D 0.47 EFB2_02368 putative oxidoreductase YdgJ low > 86
Klebsiella michiganensis M5al 0.35 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD 0.49 BWI76_RS16330 oxidoreductase low > 92
Pantoea sp. MT58 0.35 IAI47_04215 tRNA pseudouridine(13) synthase TruD 0.48 IAI47_10370 oxidoreductase low > 76
Enterobacter sp. TBS_079 0.34 MPMX20_03631 tRNA pseudouridine synthase D 0.47 MPMX20_02014 putative oxidoreductase YdgJ low > 85
Pseudomonas sp. RS175 0.33 PFR28_00423 tRNA pseudouridine synthase D 0.24 PFR28_02419 scyllo-inositol 2-dehydrogenase (NADP(+)) IolW low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_05905 pseudouridine synthase 0.24 AO356_23195 oxidoreductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_3041 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.23 Pf6N2E2_519 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) low > 103
Pseudomonas fluorescens SBW25 0.32 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.26 PFLU_RS12615 oxidoreductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.26 PFLU_RS12615 oxidoreductase low > 109
Pseudomonas simiae WCS417 0.32 PS417_06345 pseudouridine synthase 0.25 PS417_11880 oxidoreductase low > 88
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_16595 pseudouridine synthase 0.26 AO353_21375 oxidoreductase low > 101
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_3111 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.27 Pf1N1B4_4282 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) low > 87
Alteromonas macleodii MIT1002 0.31 MIT1002_00629 tRNA pseudouridine synthase D 0.40 MIT1002_03898 putative oxidoreductase YdgJ low > 70
Pseudomonas aeruginosa PA14 0.31 IKLFDK_18515 tRNA pseudouridine(13) synthase TruD 0.37 IKLFDK_27750 dehydrogenase low > 101
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.26 Psyr_3266 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.26 Psyr_3266 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal low > 86
Lysobacter sp. OAE881 0.27 ABIE51_RS06470 tRNA pseudouridine(13) synthase TruD 0.33 ABIE51_RS09990 oxidoreductase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.3137.1 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.39 Xcc-8004.927.1 Nucleoside-diphosphate-sugar epimerases low > 74

Not shown: 19 genomes with orthologs for CSW01_02815 only; 23 genomes with orthologs for CSW01_14510 only