Conservation of cofitness between CSW01_08635 and CSW01_12695 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08635 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 1.0 CSW01_12695 lactate dehydrogenase 0.57 1
Klebsiella michiganensis M5al 0.50 BWI76_RS09830 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.20 BWI76_RS27925 D-isomer specific 2-hydroxyacid dehydrogenase low > 92
Klebsiella pneumoniae MKP103 0.50 KDGMDA_18030 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.20 KDGMDA_07690 glyoxylate/hydroxypyruvate reductase GhrB low > 95
Dickeya dadantii 3937 0.50 DDA3937_RS09875 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.21 DDA3937_RS21080 glyoxylate/hydroxypyruvate reductase GhrB low > 74
Dickeya dianthicola 67-19 0.49 HGI48_RS09885 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.22 HGI48_RS00175 glyoxylate/hydroxypyruvate reductase GhrB low > 71
Dickeya dianthicola ME23 0.49 DZA65_RS10220 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.23 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB low > 75
Pectobacterium carotovorum WPP14 0.49 HER17_RS12065 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.46 HER17_RS12825 2-hydroxyacid dehydrogenase low > 75
Pantoea sp. MT58 0.48 IAI47_12800 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.40 IAI47_20620 D-2-hydroxyacid dehydrogenase low > 76
Pantoea agglomerans CFBP13505 P0401 0.45 PagCFBP13505_RS04530 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.41 PagCFBP13505_RS14205 D-2-hydroxyacid dehydrogenase low > 74
Shewanella sp. ANA-3 0.40 Shewana3_0557 methyltransferase type 11 (RefSeq) 0.32 Shewana3_3201 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 73
Shewanella oneidensis MR-1 0.40 SO0558 smtA smtA protein (NCBI ptt file) 0.32 SO3631 hprA glycerate dehydrogenase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.37 Sama_3149 smtA protein (RefSeq) 0.31 Sama_2811 glycerate dehydrogenase (RefSeq) low > 62
Shewanella loihica PV-4 0.36 Shew_0440 methyltransferase type 12 (RefSeq) 0.35 Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.30 MIT1002_01973 putative S-adenosyl-L-methionine-dependent methyltransferase 0.33 MIT1002_04054 Putative 2-hydroxyacid dehydrogenase low > 70
Pseudomonas sp. S08-1 0.29 OH686_07475 tRNA uridine 5-oxyacetic acid(34) methyltransferase 0.39 OH686_06340 D-3-phosphoglycerate dehydrogenase low > 80
Pseudomonas aeruginosa MRSN321 0.29 DY961_RS09715 methyltransferase domain-containing protein 0.33 DY961_RS28950 2-hydroxyacid dehydrogenase low > 100
Pseudomonas aeruginosa PA14 0.29 IKLFDK_29635 SAM-dependent methyltransferase 0.33 IKLFDK_00375 2-hydroxyacid dehydrogenase low > 98
Pseudomonas simiae WCS417 0.29 PS417_03035 SAM-dependent methyltransferase 0.36 PS417_04530 glycerate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_08125 SAM-dependent methyltransferase 0.36 AO356_06935 glycerate dehydrogenase low > 104
Pseudomonas aeruginosa PUPa3 0.28 DQ20_RS52330 methyltransferase domain-containing protein 0.33 DQ20_RS55745 2-hydroxyacid dehydrogenase low > 101
Pseudomonas lactucae CFBP13502 0.28 GEMAOFIL_00839 tRNA 5-carboxymethoxyuridine methyltransferase 0.37 GEMAOFIL_01109 Putative 2-hydroxyacid dehydrogenase low > 96
Pseudomonas orientalis W4I3 0.28 QF045_RS06070 methyltransferase domain-containing protein 0.36 QF045_RS07500 2-hydroxyacid dehydrogenase low > 93
Pseudomonas fluorescens SBW25 0.28 PFLU_RS03115 methyltransferase domain-containing protein 0.36 PFLU_RS04575 2-hydroxyacid dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS03115 methyltransferase domain-containing protein 0.36 PFLU_RS04575 2-hydroxyacid dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3497 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) 0.37 Pf6N2E2_3246 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_1289 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) 0.36 Pf1N1B4_2954 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.23 34
Pseudomonas sp. DMC3 0.27 GFF3328 tRNA 5-carboxymethoxyuridine methyltransferase 0.37 GFF4454 Glycerate dehydrogenase low > 89
Pseudomonas sp. RS175 0.27 PFR28_05234 tRNA 5-carboxymethoxyuridine methyltransferase 0.35 PFR28_03622 Putative 2-hydroxyacid dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_37 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) 0.34 PfGW456L13_1617 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) low > 87
Pseudomonas stutzeri RCH2 0.27 Psest_3358 Methyltransferase domain. 0.35 Psest_3223 Lactate dehydrogenase and related dehydrogenases — —
Pseudomonas sp. SVBP6 0.26 COO64_RS26300 methyltransferase domain-containing protein 0.35 COO64_RS03380 2-hydroxyacid dehydrogenase low > 93
Pseudomonas segetis P6 0.26 MPMX49_04011 tRNA 5-carboxymethoxyuridine methyltransferase 0.39 MPMX49_03707 Glycerate dehydrogenase low > 75
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_13750 SAM-dependent methyltransferase 0.35 AO353_15000 glycerate dehydrogenase low > 101
Pseudomonas sp. BP01 0.26 JOY50_RS23225 methyltransferase domain-containing protein 0.44 JOY50_RS06325 D-2-hydroxyacid dehydrogenase low > 84
Pseudomonas putida KT2440 0.25 PP_0578 putative Methyltransferase 0.34 PP_0762 Glycerate dehydrogenase low > 96

Not shown: 23 genomes with orthologs for CSW01_08635 only; 34 genomes with orthologs for CSW01_12695 only