Conservation of cofitness between CSW01_04865 and CSW01_12070 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 CSW01_12070 hypothetical protein 0.43 8
Pantoea sp. MT58 0.85 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 IAI47_06160 TSUP family transporter low > 76
Pantoea agglomerans CFBP13505 P0401 0.85 PagCFBP13505_RS03285 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.51 PagCFBP13505_RS00115 hypothetical protein low > 74
Dickeya dianthicola ME23 0.84 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 DZA65_RS15455 TSUP family transporter low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 DDA3937_RS14570 TSUP family transporter — —
Pectobacterium carotovorum WPP14 0.83 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 HER17_RS06945 sulfite exporter TauE/SafE family protein low > 75
Dickeya dianthicola 67-19 0.83 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.46 HGI48_RS14520 TSUP family transporter — —
Shewanella amazonensis SB2B 0.82 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.49 Sama_1266 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.82 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.48 Shew_2464 hypothetical protein (RefSeq) low > 60
Serratia liquefaciens MT49 0.82 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 IAI46_18015 TSUP family transporter low > 86
Rahnella sp. WP5 0.82 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 EX31_RS19675 TSUP family transporter low > 89
Shewanella sp. ANA-3 0.82 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) 0.53 Shewana3_2613 hypothetical protein (RefSeq) low > 73
Escherichia coli BW25113 0.82 b0636 ybeA hypothetical protein (NCBI) 0.47 b2327 yfcA conserved inner membrane protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.47 OHPLBJKB_01378 putative membrane transporter protein YfcA — —
Escherichia coli Nissle 1917 0.82 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 ECOLIN_RS13480 sulfite exporter TauE/SafE family protein — —
Escherichia coli BL21 0.82 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.47 ECD_02252 TauE/TSUP family inner membrane protein — —
Shewanella oneidensis MR-1 0.81 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) 0.52 SO2846 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC100 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 OKFHMN_22625 yfcA putative membrane transporter protein YfcA low > 79
Escherichia coli ECOR38 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 HEPCGN_21830 yfcA putative membrane transporter protein YfcA low > 88
Escherichia coli ECRC99 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 KEDOAH_05570 yfcA putative membrane transporter protein YfcA — —
Escherichia coli ECOR27 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 NOLOHH_14260 yfcA putative membrane transporter protein YfcA low > 76
Escherichia coli ECRC101 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 MCAODC_13665 yfcA putative membrane transporter protein YfcA — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_16400 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.50 KDGMDA_27260 Sulfite exporter TauE/SafE low > 95
Escherichia coli ECRC98 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 JDDGAC_26585 yfcA putative membrane transporter protein YfcA — —
Erwinia tracheiphila SCR3 0.81 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 LU632_RS07785 sulfite exporter TauE/SafE family protein low > 74
Escherichia fergusonii Becca 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.48 EFB2_01531 putative membrane transporter protein YfcA low > 86
Escherichia coli ECRC62 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 BNILDI_13180 yfcA putative membrane transporter protein YfcA — —
Escherichia coli ECRC102 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 NIAGMN_20400 yfcA putative membrane transporter protein YfcA — —
Enterobacter sp. TBS_079 0.81 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.49 MPMX20_03262 putative membrane transporter protein YfcA low > 85
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_02460 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 IJEDHG_17835 Sulfite exporter TauE/SafE low > 61
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.49 EX28DRAFT_0277 Predicted permeases — —
Erwinia amylovora T8 0.80 OLJFJH_17220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.48 OLJFJH_11165 Sulfite exporter TauE/SafE low > 58
Klebsiella michiganensis M5al 0.80 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 BWI76_RS20425 hypothetical protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.47 GFF1948 Putative membrane protein YfcA low > 78
Pseudomonas sp. SVBP6 0.65 COO64_RS15615 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.36 COO64_RS15960 TSUP family transporter low > 93
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.37 PfGW456L13_369 Putative membrane protein YfcA low > 87
Lysobacter sp. OAE881 0.56 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 ABIE51_RS11860 TSUP family transporter low > 62
Castellaniella sp019104865 MT123 0.47 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 ABCV34_RS12215 TSUP family transporter low > 48
Azospirillum brasilense Sp245 0.29 AZOBR_RS04060 50S rRNA methyltransferase 0.50 AZOBR_RS10405 membrane protein low > 97
Azospirillum sp. SherDot2 0.29 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.52 MPMX19_00682 putative membrane transporter protein YfcA low > 112
Phaeobacter inhibens DSM 17395 0.29 PGA1_c29750 putative ribosomal RNA large subunit methyltransferase 0.34 PGA1_c36170 Predicted permeases low > 62
Agrobacterium fabrum C58 0.22 Atu2776 hypothetical protein 0.38 Atu1591 hypothetical protein low > 89

Not shown: 69 genomes with orthologs for CSW01_04865 only; 2 genomes with orthologs for CSW01_12070 only