Conservation of cofitness between CSW01_00835 and CSW01_10815 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00835 HTH-type transcriptional activator IlvY 1.0 CSW01_10815 Cys-tRNA(Pro) deacylase 0.50 7
Shewanella oneidensis MR-1 0.51 SO4350 ilvY transcriptional regulator ilvY (NCBI ptt file) 0.50 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.51 Shewana3_0354 DNA-binding transcriptional regulator IlvY (RefSeq) 0.50 Shewana3_0957 ybaK/ebsC protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.48 IAI46_24330 HTH-type transcriptional activator IlvY 0.55 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Shewanella amazonensis SB2B 0.48 Sama_3283 DNA-binding transcriptional regulator IlvY (RefSeq) 0.49 Sama_0531 YbaK/EbsC protein (RefSeq) low > 62
Rahnella sp. WP5 0.47 EX31_RS15015 HTH-type transcriptional activator IlvY 0.55 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 89
Erwinia tracheiphila SCR3 0.47 LU632_RS24390 ilvY HTH-type transcriptional activator IlvY 0.51 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 73
Erwinia tracheiphila HP pepo 2.2 0.47 IJEDHG_09105 ilvY HTH-type transcriptional activator IlvY 0.50 IJEDHG_01120 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 61
Dickeya dianthicola 67-19 0.47 HGI48_RS20275 HTH-type transcriptional activator IlvY 0.43 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS21315 HTH-type transcriptional activator IlvY 0.43 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Erwinia amylovora T8 0.46 OLJFJH_06240 HTH-type transcriptional activator IlvY 0.54 OLJFJH_17720 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 58
Dickeya dadantii 3937 0.46 DDA3937_RS20135 HTH-type transcriptional activator IlvY 0.50 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13505_RS20920 HTH-type transcriptional activator IlvY 0.55 PagCFBP13505_RS10790 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Pantoea sp. MT58 0.46 IAI47_01045 HTH-type transcriptional activator IlvY 0.54 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 76
Shewanella loihica PV-4 0.45 Shew_0287 DNA-binding transcriptional regulator IlvY (RefSeq) 0.42 Shew_0016 ybaK/ebsC protein (RefSeq) — —
Pectobacterium carotovorum WPP14 0.45 HER17_RS01095 HTH-type transcriptional activator IlvY 0.57 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_04280 HTH-type transcriptional regulator GltC 0.55 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Escherichia coli ECRC98 0.44 JDDGAC_18250 ilvY HTH-type transcriptional activator IlvY 0.55 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Escherichia coli BW25113 0.44 b3773 ilvY DNA-binding transcriptional dual regulator (NCBI) 0.55 b0481 ybaK hypothetical protein (NCBI) low > 76
Escherichia coli BL21 0.44 ECD_03651 transcriptional activator of ilvC; autorepressor 0.55 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase low > 61
Escherichia coli ECOR27 0.44 NOLOHH_06765 ilvY HTH-type transcriptional activator IlvY 0.55 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 76
Escherichia coli ECRC102 0.44 NIAGMN_12385 ilvY HTH-type transcriptional activator IlvY 0.55 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 80
Escherichia coli ECRC101 0.44 MCAODC_05135 ilvY HTH-type transcriptional activator IlvY 0.55 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Escherichia coli ECRC100 0.44 OKFHMN_14630 ilvY HTH-type transcriptional activator IlvY 0.55 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 79
Escherichia coli ECRC99 0.44 KEDOAH_13520 ilvY HTH-type transcriptional activator IlvY 0.55 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli Nissle 1917 0.44 ECOLIN_RS21675 HTH-type transcriptional activator IlvY 0.56 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Enterobacter asburiae PDN3 0.44 EX28DRAFT_4445 Transcriptional regulator 0.53 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase low > 76
Escherichia coli ECRC62 0.44 BNILDI_04760 ilvY HTH-type transcriptional activator IlvY 0.55 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Escherichia coli ECOR38 0.44 HEPCGN_13340 ilvY HTH-type transcriptional activator IlvY 0.55 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 88
Enterobacter sp. TBS_079 0.44 MPMX20_04497 HTH-type transcriptional regulator GltC 0.54 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 85
Escherichia fergusonii Becca 0.44 EFB2_04863 HTH-type transcriptional regulator HdfR 0.56 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF2897 HTH-type transcriptional regulator IlvY 0.53 GFF4401 Cys-tRNA(Pro) deacylase YbaK low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS00985 transcriptional regulator IlvY 0.54 BWI76_RS06870 aminoacyl-tRNA deacylase low > 92
Klebsiella pneumoniae MKP103 0.43 KDGMDA_09500 HTH-type transcriptional activator IlvY 0.54 KDGMDA_14930 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 95
Alteromonas macleodii MIT1002 0.41 MIT1002_04044 HTH-type transcriptional regulator GltC 0.49 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 70
Pseudomonas sp. S08-1 0.40 OH686_08120 Transcriptional regulator IlvY, LysR family 0.52 OH686_20370 Cys-tRNA(Pro) deacylase YbaK low > 80
Pseudomonas segetis P6 0.38 MPMX49_01276 HTH-type transcriptional activator CmpR 0.45 MPMX49_01431 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Azospirillum sp. SherDot2 0.16 MPMX19_03927 HTH-type transcriptional activator CmpR 0.41 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.32 16
Paraburkholderia sabiae LMG 24235 0.15 QEN71_RS19835 LysR family transcriptional regulator 0.24 QEN71_RS02765 Cys-tRNA(Pro) deacylase low > 153
Pseudomonas stutzeri RCH2 0.15 Psest_2671 Transcriptional regulator 0.55 Psest_1454 ybaK/ebsC protein low > 67
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS02220 LysR family transcriptional regulator 0.24 RR42_RS03340 membrane protein low > 128
Pseudomonas aeruginosa PUPa3 0.15 DQ20_RS44715 LysR substrate-binding domain-containing protein 0.52 DQ20_RS42050 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase low > 101
Pseudomonas aeruginosa PA14 0.15 IKLFDK_03890 LysR family transcriptional regulator 0.52 IKLFDK_18280 Cys-tRNA(Pro) deacylase low > 98
Pseudomonas aeruginosa MRSN321 0.14 DY961_RS08085 LysR substrate-binding domain-containing protein 0.52 DY961_RS15090 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase low > 100
Variovorax sp. OAS795 0.14 ABID97_RS27255 LysR substrate-binding domain-containing protein 0.26 ABID97_RS21705 aminoacyl-tRNA deacylase low > 91
Ralstonia solanacearum PSI07 0.13 RPSI07_RS00305 LysR family transcriptional regulator 0.25 RPSI07_RS12155 Cys-tRNA(Pro) deacylase low > 81
Ralstonia solanacearum IBSBF1503 0.13 RALBFv3_RS22935 LysR family transcriptional regulator 0.25 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase low > 76
Ralstonia solanacearum UW163 0.13 UW163_RS23555 LysR family transcriptional regulator 0.25 UW163_RS08480 Cys-tRNA(Pro) deacylase — —

Not shown: 0 genomes with orthologs for CSW01_00835 only; 50 genomes with orthologs for CSW01_10815 only