Conservation of cofitness between CSW01_14565 and CSW01_08635 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14565 type VI secretion system baseplate subunit TssF 1.0 CSW01_08635 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.44 14
Dickeya dadantii 3937 0.53 DDA3937_RS07030 type VI secretion system baseplate subunit TssF 0.50 DDA3937_RS09875 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 74
Dickeya dianthicola ME23 0.53 DZA65_RS08555 type VI secretion system baseplate subunit TssF 0.49 DZA65_RS10220 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS07960 type VI secretion system baseplate subunit TssF 0.49 HGI48_RS09885 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 71
Pectobacterium carotovorum WPP14 0.52 HER17_RS04855 type VI secretion system baseplate subunit TssF 0.49 HER17_RS12065 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 75
Pseudomonas putida KT2440 0.48 PP_2621 conserved protein of unknown function 0.25 PP_0578 putative Methyltransferase low > 96
Erwinia tracheiphila SCR3 0.46 LU632_RS17675 tssF type VI secretion system baseplate subunit TssF 0.47 LU632_RS09865 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 73
Escherichia coli ECOR27 0.42 NOLOHH_02230 tssF Type VI secretion system protein TssF 0.50 NOLOHH_21980 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_03430 hypothetical protein 0.50 OHPLBJKB_02746 tRNA 5-carboxymethoxyuridine methyltransferase low > 74
Escherichia coli ECRC101 0.42 MCAODC_00390 tssF Type VI secretion system protein TssF 0.50 MCAODC_24810 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 87
Escherichia coli ECRC99 0.42 KEDOAH_18280 tssF Type VI secretion system protein TssF 0.50 KEDOAH_22315 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM — —
Escherichia coli ECRC102 0.42 NIAGMN_07720 tssF Type VI secretion system protein TssF 0.50 NIAGMN_03140 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 80
Escherichia coli ECRC98 0.42 JDDGAC_13470 tssF Type VI secretion system protein TssF 0.50 JDDGAC_09030 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 87
Escherichia coli ECRC100 0.41 OKFHMN_09870 tssF Type VI secretion system protein TssF 0.50 OKFHMN_05420 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 79
Pseudomonas segetis P6 0.39 MPMX49_00135 hypothetical protein 0.26 MPMX49_04011 tRNA 5-carboxymethoxyuridine methyltransferase low > 75
Pseudomonas sp. DMC3 0.37 GFF454 hypothetical protein 0.27 GFF3328 tRNA 5-carboxymethoxyuridine methyltransferase low > 89
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_2086 Protein ImpG/VasA 0.28 Pf1N1B4_1289 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) low > 87
Pseudomonas sp. S08-1 0.36 OH686_12825 T6SS component TssF (ImpG/VasA) 0.29 OH686_07475 tRNA uridine 5-oxyacetic acid(34) methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_09425 type VI secretion protein 0.26 AO353_13750 SAM-dependent methyltransferase low > 101
Pseudomonas aeruginosa MRSN321 0.36 DY961_RS19965 tssF;go_function=molecular_function|0003674||IEA;go_process=protein type VI secretion system baseplate subunit TssF 0.29 DY961_RS09715 methyltransferase domain-containing protein low > 100
Pseudomonas aeruginosa PUPa3 0.36 DQ20_RS54060 tssF;go_function=molecular_function|0003674||IEA;go_process=protein type VI secretion system baseplate subunit TssF 0.28 DQ20_RS52330 methyltransferase domain-containing protein low > 101
Pseudomonas aeruginosa PA14 0.36 IKLFDK_07995 Protein ImpG/VasA 0.29 IKLFDK_29635 SAM-dependent methyltransferase low > 98
Pseudomonas simiae WCS417 0.36 PS417_15310 type VI secretion protein 0.29 PS417_03035 SAM-dependent methyltransferase low > 88
Pseudomonas stutzeri RCH2 0.36 Psest_0127 type VI secretion protein, VC_A0110 family 0.27 Psest_3358 Methyltransferase domain. low > 67
Pseudomonas orientalis W4I3 0.36 QF045_RS14215 type VI secretion system baseplate subunit TssF 0.28 QF045_RS06070 methyltransferase domain-containing protein low > 93
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_12145 type VI secretion protein 0.28 AO356_08125 SAM-dependent methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4301 Protein ImpG/VasA 0.28 Pf6N2E2_3497 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_4956 protein of unknown function DUF879 0.26 Psyr_0641 smtA protein low > 86
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_4956 protein of unknown function DUF879 0.26 Psyr_0641 smtA protein low > 86
Pseudomonas sp. BP01 0.25 JOY50_RS19900 tssF type VI secretion system baseplate subunit TssF 0.26 JOY50_RS23225 methyltransferase domain-containing protein low > 84
Klebsiella pneumoniae MKP103 0.24 KDGMDA_24740 type VI secretion system baseplate subunit TssF 0.50 KDGMDA_18030 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 95
Escherichia coli Nissle 1917 0.23 ECOLIN_RS15765 type VI secretion system baseplate subunit TssF 0.50 ECOLIN_RS04875 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM — —
Enterobacter sp. TBS_079 0.23 MPMX20_01644 hypothetical protein 0.47 MPMX20_01579 tRNA 5-carboxymethoxyuridine methyltransferase low > 85
Rahnella sp. WP5 0.23 EX31_RS01975 type VI secretion system baseplate subunit TssF 0.49 EX31_RS18180 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 89
Enterobacter asburiae PDN3 0.22 EX28DRAFT_0259 type VI secretion protein, VC_A0110 family 0.46 EX28DRAFT_2015 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase low > 76
Erwinia amylovora T8 0.22 OLJFJH_03085 type VI secretion system baseplate subunit TssF 0.43 OLJFJH_16080 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 58
Pantoea sp. MT58 0.22 IAI47_17375 type VI secretion system baseplate subunit TssF 0.48 IAI47_12800 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 76
Pseudomonas sp. RS175 0.19 PFR28_02388 hypothetical protein 0.27 PFR28_05234 tRNA 5-carboxymethoxyuridine methyltransferase low > 88
Pantoea agglomerans CFBP13505 P0401 0.19 PagCFBP13505_RS19815 type VI secretion system baseplate subunit TssF 0.45 PagCFBP13505_RS04530 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 74
Pseudomonas fluorescens SBW25-INTG 0.19 PFLU_RS29650 type VI secretion system baseplate subunit TssF 0.28 PFLU_RS03115 methyltransferase domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.19 PFLU_RS29650 type VI secretion system baseplate subunit TssF 0.28 PFLU_RS03115 methyltransferase domain-containing protein low > 109
Pseudomonas lactucae CFBP13502 0.19 GEMAOFIL_00062 hypothetical protein 0.28 GEMAOFIL_00839 tRNA 5-carboxymethoxyuridine methyltransferase low > 96
Pseudomonas sp. SVBP6 0.19 COO64_RS00470 tssF type VI secretion system baseplate subunit TssF 0.26 COO64_RS26300 methyltransferase domain-containing protein low > 93
Erwinia tracheiphila HP pepo 2.2 0.18 IJEDHG_04995 tssF type VI secretion system baseplate subunit TssF 0.47 IJEDHG_20365 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF4050 Protein ImpG/VasA 0.49 GFF3678 S-adenosylmethionine-dependent methyltransferase Functionally Coupled to the MukBEF Chromosome Partitioning Mechanism low > 78
Serratia liquefaciens MT49 0.16 IAI46_05550 type VI secretion system baseplate subunit TssF 0.48 IAI46_08715 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 87

Not shown: 20 genomes with orthologs for CSW01_14565 only; 12 genomes with orthologs for CSW01_08635 only