Conservation of cofitness between CSW01_12695 and CSW01_08635 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12695 lactate dehydrogenase 1.0 CSW01_08635 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM 0.57 3
Pectobacterium carotovorum WPP14 0.46 HER17_RS12825 2-hydroxyacid dehydrogenase 0.49 HER17_RS12065 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 75
Pseudomonas sp. BP01 0.44 JOY50_RS06325 D-2-hydroxyacid dehydrogenase 0.26 JOY50_RS23225 methyltransferase domain-containing protein low > 84
Pantoea agglomerans CFBP13505 P0401 0.41 PagCFBP13505_RS14205 D-2-hydroxyacid dehydrogenase 0.45 PagCFBP13505_RS04530 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 74
Pantoea sp. MT58 0.40 IAI47_20620 D-2-hydroxyacid dehydrogenase 0.48 IAI47_12800 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 76
Pseudomonas segetis P6 0.39 MPMX49_03707 Glycerate dehydrogenase 0.26 MPMX49_04011 tRNA 5-carboxymethoxyuridine methyltransferase low > 75
Pseudomonas sp. S08-1 0.39 OH686_06340 D-3-phosphoglycerate dehydrogenase 0.29 OH686_07475 tRNA uridine 5-oxyacetic acid(34) methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3246 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.28 Pf6N2E2_3497 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) — —
Pseudomonas sp. DMC3 0.37 GFF4454 Glycerate dehydrogenase 0.27 GFF3328 tRNA 5-carboxymethoxyuridine methyltransferase low > 89
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_01109 Putative 2-hydroxyacid dehydrogenase 0.28 GEMAOFIL_00839 tRNA 5-carboxymethoxyuridine methyltransferase low > 96
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_06935 glycerate dehydrogenase 0.28 AO356_08125 SAM-dependent methyltransferase low > 104
Pseudomonas fluorescens SBW25 0.36 PFLU_RS04575 2-hydroxyacid dehydrogenase 0.28 PFLU_RS03115 methyltransferase domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS04575 2-hydroxyacid dehydrogenase 0.28 PFLU_RS03115 methyltransferase domain-containing protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2954 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.28 Pf1N1B4_1289 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) 0.23 42
Pseudomonas orientalis W4I3 0.36 QF045_RS07500 2-hydroxyacid dehydrogenase 0.28 QF045_RS06070 methyltransferase domain-containing protein low > 93
Pseudomonas simiae WCS417 0.36 PS417_04530 glycerate dehydrogenase 0.29 PS417_03035 SAM-dependent methyltransferase low > 88
Pseudomonas sp. RS175 0.35 PFR28_03622 Putative 2-hydroxyacid dehydrogenase 0.27 PFR28_05234 tRNA 5-carboxymethoxyuridine methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_15000 glycerate dehydrogenase 0.26 AO353_13750 SAM-dependent methyltransferase low > 101
Shewanella loihica PV-4 0.35 Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.36 Shew_0440 methyltransferase type 12 (RefSeq) low > 60
Pseudomonas sp. SVBP6 0.35 COO64_RS03380 2-hydroxyacid dehydrogenase 0.26 COO64_RS26300 methyltransferase domain-containing protein low > 93
Pseudomonas stutzeri RCH2 0.35 Psest_3223 Lactate dehydrogenase and related dehydrogenases 0.27 Psest_3358 Methyltransferase domain. — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1617 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.27 PfGW456L13_37 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64) low > 87
Pseudomonas putida KT2440 0.34 PP_0762 Glycerate dehydrogenase 0.25 PP_0578 putative Methyltransferase low > 96
Alteromonas macleodii MIT1002 0.33 MIT1002_04054 Putative 2-hydroxyacid dehydrogenase 0.30 MIT1002_01973 putative S-adenosyl-L-methionine-dependent methyltransferase low > 70
Pseudomonas aeruginosa PUPa3 0.33 DQ20_RS55745 2-hydroxyacid dehydrogenase 0.28 DQ20_RS52330 methyltransferase domain-containing protein low > 101
Pseudomonas aeruginosa PA14 0.33 IKLFDK_00375 2-hydroxyacid dehydrogenase 0.29 IKLFDK_29635 SAM-dependent methyltransferase low > 98
Pseudomonas aeruginosa MRSN321 0.33 DY961_RS28950 2-hydroxyacid dehydrogenase 0.29 DY961_RS09715 methyltransferase domain-containing protein low > 100
Shewanella oneidensis MR-1 0.32 SO3631 hprA glycerate dehydrogenase (NCBI ptt file) 0.40 SO0558 smtA smtA protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.32 Shewana3_3201 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.40 Shewana3_0557 methyltransferase type 11 (RefSeq) low > 73
Shewanella amazonensis SB2B 0.31 Sama_2811 glycerate dehydrogenase (RefSeq) 0.37 Sama_3149 smtA protein (RefSeq) low > 62
Dickeya dianthicola ME23 0.23 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB 0.49 DZA65_RS10220 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 75
Dickeya dianthicola 67-19 0.22 HGI48_RS00175 glyoxylate/hydroxypyruvate reductase GhrB 0.49 HGI48_RS09885 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 71
Dickeya dadantii 3937 0.21 DDA3937_RS21080 glyoxylate/hydroxypyruvate reductase GhrB 0.50 DDA3937_RS09875 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 74
Klebsiella michiganensis M5al 0.20 BWI76_RS27925 D-isomer specific 2-hydroxyacid dehydrogenase 0.50 BWI76_RS09830 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 92
Klebsiella pneumoniae MKP103 0.20 KDGMDA_07690 glyoxylate/hydroxypyruvate reductase GhrB 0.50 KDGMDA_18030 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM low > 95

Not shown: 34 genomes with orthologs for CSW01_12695 only; 23 genomes with orthologs for CSW01_08635 only