| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02560 | | chromosome initiation inhibitor | 1.0 | CSW01_06385 | | peptidase | 0.68 | 9 |
| Pseudomonas aeruginosa MRSN321 | 0.35 | DY961_RS24675 | | LysR family transcriptional regulator ArgP | 0.58 | DY961_RS24640 | | imelysin family protein | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.34 | DQ20_RS57125 | | LysR family transcriptional regulator ArgP | 0.58 | DQ20_RS57090 | | imelysin family protein | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.34 | IKLFDK_02285 | | HTH-type transcriptional regulator ArgP | 0.58 | IKLFDK_02250 | | peptidase | low | > 98 |
| Pseudomonas segetis P6 | 0.34 | ACVTMO_RS18615 | | LysR family transcriptional regulator ArgP | 0.58 | ACVTMO_RS18650 | | imelysin family protein | low | > 75 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_4057 | | regulatory protein, LysR:LysR, substrate-binding protein | 0.57 | Psyr_4061 | | imelysin, Metallo peptidase, MEROPS family M75 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_4057 | | regulatory protein, LysR:LysR, substrate-binding protein | 0.57 | Psyr_4061 | | imelysin, Metallo peptidase, MEROPS family M75 | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_04995 | | LysR family transcriptional regulator | 0.56 | AO356_05015 | | peptidase | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS23790 | | LysR family transcriptional regulator ArgP | 0.57 | PFLU_RS23820 | | peptidase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS23790 | | LysR family transcriptional regulator ArgP | 0.57 | PFLU_RS23820 | | peptidase | low | > 109 |
| Pseudomonas sp. SVBP6 | 0.32 | COO64_RS12100 | | LysR family transcriptional regulator ArgP | 0.56 | COO64_RS12080 | | imelysin family protein | low | > 93 |
| Pseudomonas sp. BP01 | 0.32 | JOY50_RS14225 | | LysR family transcriptional regulator ArgP | 0.57 | JOY50_RS14205 | | imelysin family protein | low | > 84 |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_03915 | | LysR family transcriptional regulator | 0.54 | AO353_03975 | | peptidase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_22165 | | LysR family transcriptional regulator | 0.56 | PS417_22195 | | peptidase | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_1166 | | transcriptional regulator, ArgP family | 0.58 | Psest_1159 | | Uncharacterized iron-regulated protein | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_708 | | Chromosome initiation inhibitor | 0.56 | Pf1N1B4_715 | | Iron-regulated protein A precursor | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_1782 | | Chromosome initiation inhibitor | 0.56 | PfGW456L13_1776 | | Iron-regulated protein A precursor | — | — |
| Pseudomonas lactucae CFBP13502 | 0.31 | GEMAOFIL_04569 | | HTH-type transcriptional regulator ArgP | 0.54 | GEMAOFIL_04575 | | hypothetical protein | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.31 | QF045_RS24300 | | LysR family transcriptional regulator ArgP | 0.57 | QF045_RS24330 | | imelysin family protein | low | > 93 |
| Pseudomonas sp. RS175 | 0.31 | PFR28_00608 | | HTH-type transcriptional regulator ArgP | 0.55 | PFR28_00604 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_2849 | | Chromosome initiation inhibitor | 0.56 | Pf6N2E2_2853 | | Iron-regulated protein A precursor | low | > 103 |
| Marinobacter adhaerens HP15 | 0.30 | HP15_868 | | transcriptional regulator, LysR family | 0.56 | HP15_2564 | | lipoprotein | low | > 73 |
| Pseudomonas sp. DMC3 | 0.30 | GFF5060 | | HTH-type transcriptional regulator ArgP | 0.55 | GFF5064 | | hypothetical protein | low | > 89 |
| Pseudomonas putida KT2440 | 0.30 | PP_0917 | | Chromosome initiation inhibitor | 0.58 | PP_0913 | | conserved exported protein of unknown function | low | > 96 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_07195 | | Transcriptional regulator ArgP, LysR family | 0.58 | OH686_17390 | | Iron-regulated protein A precursor | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF5065 | | Chromosome initiation inhibitor | 0.31 | GFF2484 | | Iron-regulated protein A precursor | — | — |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01759 | | putative HTH-type transcriptional regulator | 0.42 | MPMX19_05320 | | hypothetical protein | low | > 112 |
| Agrobacterium fabrum C58 | 0.27 | Atu0928 | | transcriptional regulator, LysR family | 0.42 | Atu0288 | | hypothetical protein | low | > 89 |
| Acidovorax sp. GW101-3H11 | 0.27 | Ac3H11_3378 | | chromosome replication initiation inhibitor protein | 0.30 | Ac3H11_1655 | | Iron-regulated protein A precursor | low | > 79 |
| Azospirillum brasilense Sp245 | 0.26 | AZOBR_RS01600 | | LysR family transcriptional regulator | 0.43 | AZOBR_RS31725 | | peptidase | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.26 | Dshi_0711 | | transcriptional regulator, LysR family (RefSeq) | 0.42 | Dshi_0563 | | lipoprotein, putative (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.23 | PGA1_c21740 | | transcriptional regulator, ArgP family | 0.44 | PGA1_c08290 | | putative peptidase M75 | low | > 62 |
Not shown: 53 genomes with orthologs for CSW01_02560 only; 4 genomes with orthologs for CSW01_06385 only