| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_11735 | | DJ-1 family protein | 1.0 | CSW01_05295 | | low molecular weight phosphotyrosine protein phosphatase | 0.56 | 11 |
| Pectobacterium carotovorum WPP14 | 0.37 | HER17_RS15915 | | protein deglycase YajL | 0.23 | HER17_RS14605 | | protein-tyrosine-phosphatase | low | > 75 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_04945 | | protein deglycase YajL | 0.24 | IAI46_08015 | | protein tyrosine phosphatase | low | > 87 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS05550 | | protein deglycase YajL | 0.19 | DDA3937_RS06715 | | protein-tyrosine-phosphatase | low | > 74 |
| Escherichia coli BL21 | 0.35 | ECD_00372 | | oxidative-stress-resistance chaperone | 0.24 | ECD_00985 | | O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase | — | — |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS02555 | | protein deglycase YajL | 0.23 | ECOLIN_RS12135 | | low molecular weight protein-tyrosine-phosphatase Wzb | — | — |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_07030 | yajL | protein deglycase YajL | 0.23 | HEPCGN_03005 | wzb | low molecular weight protein-tyrosine-phosphatase Wzb | low | > 88 |
| Escherichia fergusonii Becca | 0.35 | EFB2_03633 | | Protein/nucleic acid deglycase 3 | 0.23 | EFB2_01793 | | Low molecular weight protein-tyrosine-phosphatase Wzb | low | > 86 |
| Escherichia coli ECRC62 | 0.35 | BNILDI_22765 | yajL | protein deglycase YajL | 0.24 | BNILDI_19825 | etp | protein-tyrosine-phosphatase Etp | low | > 75 |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_01350 | yajL | protein deglycase YajL | 0.24 | NOLOHH_21660 | etp | protein-tyrosine-phosphatase Etp | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_03252 | | Protein/nucleic acid deglycase 3 | 0.24 | OHPLBJKB_02683 | | Low molecular weight protein-tyrosine-phosphatase Etp | low | > 74 |
| Escherichia coli BW25113 | 0.35 | b0424 | thiJ | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (VIMSS) | 0.24 | b0982 | yccY | putative phosphatase (VIMSS) | low | > 76 |
| Escherichia coli ECRC98 | 0.35 | JDDGAC_12055 | yajL | protein deglycase YajL | 0.24 | JDDGAC_08370 | etp | protein-tyrosine-phosphatase Etp | low | > 87 |
| Escherichia coli ECRC99 | 0.35 | KEDOAH_19565 | yajL | protein deglycase YajL | 0.24 | KEDOAH_22985 | etp | protein-tyrosine-phosphatase Etp | — | — |
| Escherichia coli ECRC101 | 0.35 | MCAODC_27625 | yajL | protein deglycase YajL | 0.24 | MCAODC_24145 | etp | protein-tyrosine-phosphatase Etp | low | > 87 |
| Escherichia coli ECRC100 | 0.35 | OKFHMN_08400 | yajL | protein deglycase YajL | 0.24 | OKFHMN_04760 | etp | protein-tyrosine-phosphatase Etp | low | > 79 |
| Escherichia coli ECRC102 | 0.35 | NIAGMN_06455 | yajL | protein deglycase YajL | 0.24 | NIAGMN_23090 | etp | protein-tyrosine-phosphatase Etp | low | > 80 |
| Pantoea agglomerans CFBP13505 P0401 | 0.35 | PagCFBP13505_RS10475 | | protein deglycase YajL | 0.22 | PagCFBP13505_RS01045 | | protein-tyrosine-phosphatase | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.34 | IJEDHG_16330 | yajL | protein deglycase YajL | 0.21 | IJEDHG_18880 | | protein tyrosine phosphatase | low | > 61 |
| Pantoea sp. MT58 | 0.34 | IAI47_14720 | | protein deglycase YajL | 0.21 | IAI47_06935 | | protein tyrosine phosphatase | — | — |
| Erwinia tracheiphila SCR3 | 0.34 | LU632_RS18460 | yajL | protein deglycase YajL | 0.21 | LU632_RS08775 | | protein tyrosine phosphatase | low | > 73 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_2547 | | DJ-1 family protein | 0.26 | EX28DRAFT_0494 | | Protein-tyrosine-phosphatase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.31 | MPMX20_01015 | | Protein/nucleic acid deglycase 3 | 0.26 | MPMX20_03043 | | Low molecular weight protein-tyrosine-phosphatase Wzb | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF4335 | | DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 | 0.23 | GFF3867 | | Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48) | low | > 78 |
| Erwinia amylovora T8 | 0.30 | OLJFJH_18045 | | protein deglycase YajL | 0.20 | OLJFJH_12030 | | putative low molecular weight protein-tyrosine-phosphatase AmsI | low | > 58 |
| Pseudomonas stutzeri RCH2 | 0.24 | Psest_3449 | | DJ-1 family protein | 0.41 | Psest_1677 | | Protein-tyrosine-phosphatase | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.23 | HMPREF1078_RS10285 | | DJ-1/PfpI family protein | 0.40 | HMPREF1078_RS13055 | | low molecular weight protein-tyrosine-phosphatase | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.23 | BT3922 | | putative ThiJ family intracellular protease/amidase (NCBI ptt file) | 0.40 | BT2750 | | putative protein-tyrosine-phosphatase (NCBI ptt file) | low | > 81 |
| Pseudomonas sp. S08-1 | 0.23 | OH686_16070 | | DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, PfpI, Hsp31 | 0.45 | OH686_22075 | | Low molecular weight protein tyrosine phosphatase | low | > 80 |
| Pseudomonas sp. DMC3 | 0.23 | GFF3941 | | Protein/nucleic acid deglycase 3 | 0.46 | GFF4772 | | Putative low molecular weight protein-tyrosine-phosphatase | low | > 89 |
| Phocaeicola dorei CL03T12C01 | 0.22 | ABI39_RS02480 | | DJ-1/PfpI family protein | 0.39 | ABI39_RS07740 | | low molecular weight phosphotyrosine protein phosphatase | low | > 72 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_2757 | | DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 | 0.45 | Pf1N1B4_467 | | Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.22 | HMPREF1058_RS08305 | | DJ-1/PfpI family protein | 0.39 | HMPREF1058_RS12730 | | low molecular weight phosphotyrosine protein phosphatase | low | > 67 |
| Bacteroides stercoris CC31F | 0.21 | HMPREF1181_RS06625 | | DJ-1/PfpI family protein | 0.38 | HMPREF1181_RS00665 | | low molecular weight phosphotyrosine protein phosphatase | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.21 | BACOVA_01147 | | DJ-1 family protein | 0.40 | BACOVA_01060 | | phosphotyrosine protein phosphatase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.20 | AO353_13920 | | dihydroxyacetone kinase | 0.44 | AO353_01435 | | protein tyrosine phosphatase | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.19 | COO64_RS02875 | | DJ-1 family glyoxalase III | 0.40 | COO64_RS05860 | | low molecular weight protein-tyrosine-phosphatase | 0.41 | 12 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_1433 | | DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 | 0.45 | PfGW456L13_2089 | | Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) | low | > 87 |
| Pseudomonas sp. RS175 | 0.16 | PFR28_03806 | | Protein/nucleic acid deglycase 3 | 0.45 | PFR28_03025 | | Putative low molecular weight protein-tyrosine-phosphatase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.15 | Pf6N2E2_5066 | | DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 | 0.45 | Pf6N2E2_5936 | | Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.14 | Dshi_0124 | | intracellular protease, PfpI family (RefSeq) | 0.38 | Dshi_2613 | | protein tyrosine phosphatase (RefSeq) | low | > 64 |
| Pseudomonas fluorescens FW300-N2C3 | 0.13 | AO356_15615 | | dihydroxyacetone kinase | 0.45 | AO356_20090 | | protein tyrosine phosphatase | — | — |
| Sphingobium sp. HT1-2 | 0.13 | GFF4838 | | Intracellular protease | 0.38 | GFF5054 | | Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) | low | > 95 |
| Azospirillum brasilense Sp245 | 0.13 | AZOBR_RS08030 | | glutamine amidotransferase | 0.40 | AZOBR_RS00615 | | phosphotyrosine protein phosphatase | — | — |
| Azospirillum sp. SherDot2 | 0.12 | MPMX19_01794 | | Putative cysteine protease YraA | 0.43 | MPMX19_02649 | | Putative low molecular weight protein-tyrosine-phosphatase | low | > 112 |
Not shown: 7 genomes with orthologs for CSW01_11735 only; 50 genomes with orthologs for CSW01_05295 only