Conservation of cofitness between CSW01_10815 and CSW01_00835 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10815 Cys-tRNA(Pro) deacylase 1.0 CSW01_00835 HTH-type transcriptional activator IlvY 0.50 5
Pectobacterium carotovorum WPP14 0.57 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.45 HER17_RS01095 HTH-type transcriptional activator IlvY low > 75
Escherichia fergusonii Becca 0.56 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 EFB2_04863 HTH-type transcriptional regulator HdfR low > 86
Escherichia coli Nissle 1917 0.56 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 ECOLIN_RS21675 HTH-type transcriptional activator IlvY — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 OHPLBJKB_04280 HTH-type transcriptional regulator GltC low > 74
Rahnella sp. WP5 0.55 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 EX31_RS15015 HTH-type transcriptional activator IlvY low > 89
Escherichia coli ECOR38 0.55 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 HEPCGN_13340 ilvY HTH-type transcriptional activator IlvY low > 88
Escherichia coli ECOR27 0.55 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 NOLOHH_06765 ilvY HTH-type transcriptional activator IlvY low > 76
Escherichia coli BW25113 0.55 b0481 ybaK hypothetical protein (NCBI) 0.44 b3773 ilvY DNA-binding transcriptional dual regulator (NCBI) 0.24 7
Escherichia coli ECRC62 0.55 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 BNILDI_04760 ilvY HTH-type transcriptional activator IlvY low > 75
Pantoea agglomerans CFBP13505 P0401 0.55 PagCFBP13505_RS10790 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 PagCFBP13505_RS20920 HTH-type transcriptional activator IlvY low > 74
Escherichia coli BL21 0.55 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.44 ECD_03651 transcriptional activator of ilvC; autorepressor low > 61
Serratia liquefaciens MT49 0.55 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.48 IAI46_24330 HTH-type transcriptional activator IlvY low > 87
Pseudomonas stutzeri RCH2 0.55 Psest_1454 ybaK/ebsC protein 0.15 Psest_2671 Transcriptional regulator low > 67
Escherichia coli ECRC99 0.55 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 KEDOAH_13520 ilvY HTH-type transcriptional activator IlvY — —
Escherichia coli ECRC100 0.55 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 OKFHMN_14630 ilvY HTH-type transcriptional activator IlvY low > 79
Escherichia coli ECRC98 0.55 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 JDDGAC_18250 ilvY HTH-type transcriptional activator IlvY low > 87
Escherichia coli ECRC101 0.55 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 MCAODC_05135 ilvY HTH-type transcriptional activator IlvY low > 87
Escherichia coli ECRC102 0.55 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 NIAGMN_12385 ilvY HTH-type transcriptional activator IlvY low > 80
Pantoea sp. MT58 0.54 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 IAI47_01045 HTH-type transcriptional activator IlvY low > 76
Erwinia amylovora T8 0.54 OLJFJH_17720 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 OLJFJH_06240 HTH-type transcriptional activator IlvY low > 58
Enterobacter sp. TBS_079 0.54 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 MPMX20_04497 HTH-type transcriptional regulator GltC low > 85
Klebsiella pneumoniae MKP103 0.54 KDGMDA_14930 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 KDGMDA_09500 HTH-type transcriptional activator IlvY low > 95
Klebsiella michiganensis M5al 0.54 BWI76_RS06870 aminoacyl-tRNA deacylase 0.43 BWI76_RS00985 transcriptional regulator IlvY low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4401 Cys-tRNA(Pro) deacylase YbaK 0.43 GFF2897 HTH-type transcriptional regulator IlvY low > 78
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.44 EX28DRAFT_4445 Transcriptional regulator low > 76
Pseudomonas aeruginosa MRSN321 0.52 DY961_RS15090 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.14 DY961_RS08085 LysR substrate-binding domain-containing protein low > 100
Pseudomonas aeruginosa PUPa3 0.52 DQ20_RS42050 ybaK;go_function=aminoacyl-tRNA Cys-tRNA(Pro) deacylase 0.15 DQ20_RS44715 LysR substrate-binding domain-containing protein low > 101
Pseudomonas aeruginosa PA14 0.52 IKLFDK_18280 Cys-tRNA(Pro) deacylase 0.15 IKLFDK_03890 LysR family transcriptional regulator low > 98
Pseudomonas sp. S08-1 0.52 OH686_20370 Cys-tRNA(Pro) deacylase YbaK 0.40 OH686_08120 Transcriptional regulator IlvY, LysR family low > 80
Erwinia tracheiphila SCR3 0.51 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 LU632_RS24390 ilvY HTH-type transcriptional activator IlvY low > 73
Erwinia tracheiphila HP pepo 2.2 0.50 IJEDHG_01120 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 IJEDHG_09105 ilvY HTH-type transcriptional activator IlvY low > 61
Shewanella oneidensis MR-1 0.50 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.51 SO4350 ilvY transcriptional regulator ilvY (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.51 Shewana3_0354 DNA-binding transcriptional regulator IlvY (RefSeq) low > 73
Dickeya dadantii 3937 0.50 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 DDA3937_RS20135 HTH-type transcriptional activator IlvY low > 74
Alteromonas macleodii MIT1002 0.49 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.41 MIT1002_04044 HTH-type transcriptional regulator GltC low > 70
Shewanella amazonensis SB2B 0.49 Sama_0531 YbaK/EbsC protein (RefSeq) 0.48 Sama_3283 DNA-binding transcriptional regulator IlvY (RefSeq) low > 62
Pseudomonas segetis P6 0.45 MPMX49_01431 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.38 MPMX49_01276 HTH-type transcriptional activator CmpR low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 HGI48_RS20275 HTH-type transcriptional activator IlvY low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 DZA65_RS21315 HTH-type transcriptional activator IlvY low > 75
Shewanella loihica PV-4 0.42 Shew_0016 ybaK/ebsC protein (RefSeq) 0.45 Shew_0287 DNA-binding transcriptional regulator IlvY (RefSeq) — —
Azospirillum sp. SherDot2 0.41 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.16 MPMX19_03927 HTH-type transcriptional activator CmpR low > 112
Variovorax sp. OAS795 0.26 ABID97_RS21705 aminoacyl-tRNA deacylase 0.14 ABID97_RS27255 LysR substrate-binding domain-containing protein low > 91
Ralstonia solanacearum UW163 0.25 UW163_RS08480 Cys-tRNA(Pro) deacylase 0.13 UW163_RS23555 LysR family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase 0.13 RALBFv3_RS22935 LysR family transcriptional regulator low > 76
Ralstonia solanacearum PSI07 0.25 RPSI07_RS12155 Cys-tRNA(Pro) deacylase 0.13 RPSI07_RS00305 LysR family transcriptional regulator low > 81
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS03340 membrane protein 0.15 RR42_RS02220 LysR family transcriptional regulator low > 128
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS02765 Cys-tRNA(Pro) deacylase 0.15 QEN71_RS19835 LysR family transcriptional regulator low > 153

Not shown: 50 genomes with orthologs for CSW01_10815 only; 0 genomes with orthologs for CSW01_00835 only