Conservation of cofitness between BWI76_RS00940 and BWI76_RS01560 in Klebsiella michiganensis M5al

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Klebsiella michiganensis M5al 1.0 BWI76_RS00940 transcriptional regulator HdfR 1.0 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.29 17
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF2907 HTH-type transcriptional regulator hdfR 0.74 GFF4197 Regulator of sigma D low > 78
Escherichia coli BW25113 0.83 b4480 hdfR transcriptional regulator HdfR (NCBI) 0.75 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_04288 HTH-type transcriptional regulator HdfR 0.75 OHPLBJKB_04055 Regulator of sigma D low > 73
Escherichia coli BL21 0.83 ECD_03642 flhDC operon transcriptional repressor 0.75 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit low > 61
Escherichia coli ECOR38 0.82 HEPCGN_13385 hdfR HTH-type transcriptional regulator HdfR 0.75 HEPCGN_12005 rsd sigma D regulator low > 87
Escherichia coli Nissle 1917 0.82 ECOLIN_RS21630 HTH-type transcriptional regulator HdfR 0.74 ECOLIN_RS23045 sigma D regulator low > 55
Escherichia fergusonii Becca 0.82 EFB2_04871 HTH-type transcriptional regulator HdfR 0.74 EFB2_04616 Regulator of sigma D low > 86
Escherichia coli ECRC98 0.82 JDDGAC_18295 hdfR HTH-type transcriptional regulator HdfR 0.75 JDDGAC_16995 rsd sigma D regulator low > 86
Escherichia coli ECRC62 0.82 BNILDI_04715 hdfR HTH-type transcriptional regulator HdfR 0.75 BNILDI_06010 rsd sigma D regulator low > 75
Escherichia coli ECRC99 0.82 KEDOAH_13475 hdfR HTH-type transcriptional regulator HdfR 0.75 KEDOAH_14790 rsd sigma D regulator — —
Escherichia coli ECRC100 0.82 OKFHMN_14675 hdfR HTH-type transcriptional regulator HdfR 0.75 OKFHMN_13370 rsd sigma D regulator low > 80
Escherichia coli ECOR27 0.82 NOLOHH_06810 hdfR HTH-type transcriptional regulator HdfR 0.75 NOLOHH_05515 rsd sigma D regulator low > 75
Escherichia coli ECRC102 0.82 NIAGMN_12430 hdfR HTH-type transcriptional regulator HdfR 0.75 NIAGMN_11120 rsd sigma D regulator — —
Escherichia coli ECRC101 0.82 MCAODC_05180 hdfR HTH-type transcriptional regulator HdfR 0.75 MCAODC_03870 rsd sigma D regulator low > 87
Enterobacter sp. TBS_079 0.82 MPMX20_04505 HTH-type transcriptional regulator HdfR 0.79 MPMX20_00218 Regulator of sigma D 0.29 34
Enterobacter asburiae PDN3 0.81 EX28DRAFT_4436 Transcriptional regulator 0.78 EX28DRAFT_4537 Regulator of sigma D low > 76
Pantoea sp. MT58 0.64 IAI47_01000 HTH-type transcriptional regulator HdfR 0.60 IAI47_18080 Rsd/AlgQ family anti-sigma factor low > 76
Pectobacterium carotovorum WPP14 0.64 HER17_RS01040 HTH-type transcriptional regulator HdfR 0.53 HER17_RS20375 Rsd/AlgQ family anti-sigma factor low > 75
Erwinia tracheiphila SCR3 0.64 LU632_RS24450 hdfR HTH-type transcriptional regulator HdfR 0.59 LU632_RS00975 Rsd/AlgQ family anti-sigma factor low > 74
Serratia liquefaciens MT49 0.63 IAI46_24385 HTH-type transcriptional regulator HdfR 0.54 IAI46_01325 Rsd/AlgQ family anti-sigma factor low > 86
Dickeya dadantii 3937 0.62 DDA3937_RS20190 HTH-type transcriptional regulator HdfR 0.37 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor low > 74
Rahnella sp. WP5 0.62 EX31_RS14970 HTH-type transcriptional regulator HdfR 0.52 EX31_RS16820 Rsd/AlgQ family anti-sigma factor low > 89
Dickeya dianthicola ME23 0.62 DZA65_RS21375 HTH-type transcriptional regulator HdfR 0.35 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor low > 75
Dickeya dianthicola 67-19 0.62 HGI48_RS20335 HTH-type transcriptional regulator HdfR 0.36 HGI48_RS01175 sigma D regulator low > 71
Shewanella oneidensis MR-1 0.33 SO2202 transcriptional regulator, LysR family (NCBI ptt file) 0.28 SO0433 rsd regulator of sigma D (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.33 Shewana3_2403 LysR family transcriptional regulator (RefSeq) 0.28 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) low > 73
Shewanella amazonensis SB2B 0.32 Sama_1997 LysR family transcriptional regulator (RefSeq) 0.30 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_19195 LysR family transcriptional regulator 0.26 CSW01_01710 Rsd/AlgQ family anti-sigma factor low > 62
Shewanella loihica PV-4 0.26 Shew_2897 LysR family transcriptional regulator (RefSeq) 0.29 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) low > 60
Pseudomonas fluorescens SBW25-INTG 0.19 PFLU_RS19485 LysR family transcriptional regulator 0.27 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas fluorescens SBW25 0.19 PFLU_RS19485 LysR family transcriptional regulator 0.27 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor low > 109
Pseudomonas simiae WCS417 0.19 PS417_17700 LysR family transcriptional regulator 0.26 PS417_27505 transcriptional regulator low > 88
Pseudomonas stutzeri RCH2 0.18 Psest_0802 Transcriptional regulator 0.25 Psest_3743 Regulator of sigma D low > 67
Pseudomonas fluorescens GW456-L13 0.18 PfGW456L13_2837 HTH-type transcriptional regulator hdfR 0.28 PfGW456L13_861 Regulator of sigma D low > 87
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_22745 LysR family transcriptional regulator 0.28 AO353_08965 transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_2079 HTH-type transcriptional regulator hdfR 0.27 Pf6N2E2_4435 Regulator of sigma D low > 103
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_00585 LysR family transcriptional regulator 0.28 AO356_12810 transcriptional regulator low > 104
Pseudomonas putida KT2440 0.16 PP_2350 LysR family transcriptional regulator 0.25 PP_0191 Transcriptional regulatory protein AlgQ low > 96
Pseudomonas sp. RS175 0.16 PFR28_01360 HTH-type transcriptional regulator HdfR 0.26 PFR28_04361 Regulator of sigma D low > 88

Not shown: 5 genomes with orthologs for BWI76_RS00940 only; 6 genomes with orthologs for BWI76_RS01560 only