Conservation of cofitness between BPHYT_RS10945 and BPHYT_RS02415 in Burkholderia phytofirmans PsJN

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS10945 2-deoxy-D-gluconate 3-dehydrogenase 1.0 BPHYT_RS02415 cytochrome C550 0.31 19
Paraburkholderia bryophila 376MFSha3.1 0.89 H281DRAFT_01159 2-deoxy-D-gluconate 3-dehydrogenase 0.96 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Paraburkholderia graminis OAS925 0.88 ABIE53_002285 2-deoxy-D-gluconate 3-dehydrogenase 0.96 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS37290 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.85 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS20810 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.57 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Enterobacter sp. TBS_079 0.72 MPMX20_01886 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.34 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Pantoea sp. MT58 0.71 IAI47_11020 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.33 IAI47_13090 serine hydrolase low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS00060 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.32 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Klebsiella michiganensis M5al 0.69 BWI76_RS11775 2-deoxy-D-gluconate 3-dehydrogenase 0.32 BWI76_RS18780 D-alanyl-D-alanine carboxypeptidase low > 92
Rahnella sp. WP5 0.69 EX31_RS14110 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 EX31_RS07145 serine hydrolase 0.32 73
Pectobacterium carotovorum WPP14 0.69 HER17_RS11410 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.33 HER17_RS12545 serine hydrolase low > 75
Dickeya dadantii 3937 0.68 DDA3937_RS11335 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.33 DDA3937_RS09420 serine hydrolase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF1327 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) 0.31 GFF3923 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Dickeya dianthicola 67-19 0.67 HGI48_RS11375 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.33 HGI48_RS09435 serine hydrolase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS11720 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.33 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Escherichia coli Nissle 1917 0.67 ECOLIN_RS15950 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.67 MCAODC_10450 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli ECRC62 0.67 BNILDI_10290 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli ECRC98 0.67 JDDGAC_23590 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 86
Escherichia fergusonii Becca 0.67 EFB2_01041 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.35 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli ECOR27 0.67 NOLOHH_11810 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 75
Escherichia coli ECRC102 0.67 NIAGMN_17695 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BW25113 0.67 b2842 kduD 2-deoxy-D-gluconate 3-dehydrogenase (NCBI) 0.35 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli ECRC99 0.67 KEDOAH_08205 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECOR38 0.67 HEPCGN_19585 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 87
Escherichia coli ECRC100 0.67 OKFHMN_19925 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.35 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00887 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.35 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2921 2-deoxy-D-gluconate 3-dehydrogenase 0.35 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Rhizobium sp. OAE497 0.65 ABIE40_RS20635 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.22 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107
Sphingomonas koreensis DSMZ 15582 0.65 Ga0059261_2966 2-deoxy-D-gluconate 3-dehydrogenase 0.25 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum brasilense Sp245 0.64 AZOBR_RS30220 3-ketoacyl-ACP reductase 0.32 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum sp. SherDot2 0.61 MPMX19_05789 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.32 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.207.1 hypothetical protein 0.38 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Lysobacter sp. OAE881 0.59 ABIE51_RS02825 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Sinorhizobium meliloti 1021 0.57 SM_b21348 2-deoxy-D-gluconate 3-dehydrogenase 0.24 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Bosea sp. OAE506 0.56 ABIE41_RS07840 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.27 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Agrobacterium fabrum C58 0.53 Atu3141 2-deoxy-D-gluconate 3-dehydrogenase 0.22 Atu1499 penicillin binding protein low > 89
Alteromonas macleodii MIT1002 0.46 MIT1002_03304 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 0.36 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Escherichia coli BL21 0.43 ECD_02618 putative SDR family oxidoreductase 0.35 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 61
Dinoroseobacter shibae DFL-12 0.32 Dshi_2035 short-chain dehydrogenase/reductase SDR (RefSeq) 0.23 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —

Not shown: 4 genomes with orthologs for BPHYT_RS10945 only; 43 genomes with orthologs for BPHYT_RS02415 only