Conservation of cofitness between BNILDI_10480 and BNILDI_04665 in Escherichia coli ECRC62

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC62 1.0 BNILDI_10480 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.0 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR 0.75 12
Escherichia coli BW25113 1.00 b2812 ygdL hypothetical protein (NCBI) 1.00 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) 0.23 73
Escherichia coli ECOR38 1.00 HEPCGN_19350 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli ECOR27 1.00 NOLOHH_11975 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli BL21 1.00 ECD_02663 tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA 0.99 ECD_03639 transcriptional repressor of ribose metabolism low > 61
Escherichia fergusonii Becca 0.99 EFB2_01105 tRNA threonylcarbamoyladenosine dehydratase 1.00 EFB2_04880 Ribose operon repressor low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15670 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.96 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR low > 55
Escherichia coli ECRC99 0.99 KEDOAH_08035 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC98 0.98 JDDGAC_23760 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 86
Escherichia coli ECRC101 0.98 MCAODC_10620 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli ECRC100 0.98 OKFHMN_20095 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 80
Escherichia coli ECRC102 0.98 NIAGMN_17865 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 1.00 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4870 CsdL (EC-YgdL) protein of the HesA/MoeB/ThiF family, part of the CsdA-E-L sulfur transfer pathway 0.90 GFF1704 Ribose operon repressor low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_03675 tRNA threonylcarbamoyladenosine dehydratase 0.88 MPMX20_04614 Ribose operon repressor low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2888 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.89 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Klebsiella michiganensis M5al 0.89 BWI76_RS22975 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.86 BWI76_RS00295 transcriptional regulator RbsR low > 92
Serratia liquefaciens MT49 0.84 IAI46_20360 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.73 IAI46_25050 ribose operon transcriptional repressor RbsR 0.44 56
Rahnella sp. WP5 0.84 EX31_RS13130 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.73 EX31_RS06195 ribose operon transcriptional repressor RbsR low > 89
Pantoea sp. MT58 0.83 IAI47_04005 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.74 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS05030 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.71 DDA3937_RS00055 ribose operon transcriptional repressor RbsR low > 74
Pectobacterium carotovorum WPP14 0.80 HER17_RS16435 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.71 HER17_RS21525 ribose operon transcriptional repressor RbsR low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS05035 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.71 HGI48_RS21310 ribose operon transcriptional repressor RbsR low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS05375 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.66 DZA65_RS22290 substrate-binding domain-containing protein low > 75
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_11750 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA 0.57 CSW01_14670 transcriptional repressor PurR low > 62
Shewanella loihica PV-4 0.61 Shew_3251 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.22 Shew_1870 LacI family transcription regulator (RefSeq) low > 60
Shewanella sp. ANA-3 0.58 Shewana3_0735 UBA/THIF-type NAD/FAD binding protein (RefSeq) 0.22 Shewana3_3122 LacI family transcription regulator (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO3895 HesA/MoeB/ThiF family protein (NCBI ptt file) 0.23 SO3516 transcriptional regulator, LacI family (NCBI ptt file) low > 76
Paraburkholderia graminis OAS925 0.51 ABIE53_003371 tRNA A37 threonylcarbamoyladenosine dehydratase 0.36 ABIE53_002322 LacI family transcriptional regulator low > 113
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_4719 HesA/MoeB/ThiF family protein related to EC-YgdL 0.37 PfGW456L13_3909 Ribose operon repressor low > 87
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_3074 HesA/MoeB/ThiF family protein related to EC-YgdL 0.38 Pf1N1B4_6032 Ribose operon repressor low > 87
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06230 heme biosynthesis protein HemY 0.39 HSERO_RS11495 LacI family transcription regulator low > 78
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS14805 tRNA threonylcarbamoyladenosine dehydratase 0.26 LRK54_RS08670 LacI family transcriptional regulator low > 59
Rhodanobacter denitrificans MT42 0.46 LRK55_RS14520 tRNA threonylcarbamoyladenosine dehydratase 0.26 LRK55_RS08435 LacI family DNA-binding transcriptional regulator low > 63
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_03630 tcdA tRNA A37 threonylcarbamoyladenosine dehydratase 0.27 OKGIIK_15435 LacI family transcriptional regulator low > 52
Variovorax sp. OAS795 0.39 ABID97_RS16680 tRNA threonylcarbamoyladenosine dehydratase 0.38 ABID97_RS24770 LacI family DNA-binding transcriptional regulator low > 91
Acidovorax sp. GW101-3H11 0.36 Ac3H11_2482 Probable HesA/MoeB/ThiF family protein 0.37 Ac3H11_1840 Ribose operon repressor low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF4538 Probable HesA/MoeB/ThiF family protein 0.25 GFF4454 Transcriptional regulator, LacI family low > 90
Variovorax sp. SCN45 0.33 GFF289 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 0.37 GFF2137 Ribose operon repressor low > 127
Bacteroides ovatus ATCC 8483 0.21 BACOVA_03472 ThiF family protein 0.24 BACOVA_02049 sugar-binding domain protein low > 94

Not shown: 37 genomes with orthologs for BNILDI_10480 only; 4 genomes with orthologs for BNILDI_04665 only