Conservation of cofitness between Atu2162 and Atu0052 in Agrobacterium fabrum C58

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu2162 periplasmic immunogenic protein 1.0 Atu0052 helicase 0.25 1
Rhizobium sp. OAE497 0.60 ABIE40_RS12160 SIMPL domain-containing protein 0.70 ABIE40_RS19515 ATP-dependent helicase HrpB low > 107
Sinorhizobium meliloti 1021 0.49 SMc01556 hypothetical protein 0.69 SMc02586 ATP-dependent helicase low > 103
Dinoroseobacter shibae DFL-12 0.29 Dshi_0791 protein of unknown function DUF541 (RefSeq) 0.34 Dshi_2580 ATP-dependent helicase HrpB (RefSeq) low > 64
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.1878.1 Protein of unknown function DUF541 0.34 Xcc-8004.354.1 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. low > 74
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_02378 SIMPL family protein 0.46 CCNA_01243 ATP-dependent helicase hrpB low > 67
Caulobacter crescentus NA1000 0.24 CCNA_02378 SIMPL family protein 0.46 CCNA_01243 ATP-dependent helicase hrpB low > 66
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_1880 Uncharacterized conserved protein 0.39 Ga0059261_2125 ATP-dependent helicase HrpB low > 68
Lysobacter sp. OAE881 0.22 ABIE51_RS06775 SIMPL domain-containing protein 0.33 ABIE51_RS00675 ATP-dependent helicase HrpB low > 62
Rhodopseudomonas palustris CGA009 0.22 TX73_001290 SIMPL domain-containing protein 0.50 TX73_002770 ATP-dependent helicase HrpB low > 86
Phaeobacter inhibens DSM 17395 0.21 PGA1_c07630 Uncharacterized conserved protein 0.34 PGA1_c24190 ATP-dependent RNA helicase HrpB low > 62
Shewanella oneidensis MR-1 0.20 SO4070 conserved hypothetical protein (NCBI ptt file) 0.33 SO0632 hrpB ATP-dependent helicase HrpB (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.20 Sama_0486 hypothetical protein (RefSeq) 0.32 Sama_2972 ATP-dependent helicase HrpB (RefSeq) low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_08325 SIMPL domain-containing protein 0.39 CA264_03600 ATP-dependent helicase HrpB low > 74
Rahnella sp. WP5 0.18 EX31_RS21445 oxidative stress defense protein 0.38 EX31_RS03235 ATP-dependent helicase HrpB low > 89
Klebsiella michiganensis M5al 0.17 BWI76_RS23960 oxidative stress defense protein 0.36 BWI76_RS05030 ATP-dependent helicase 0.29 27
Serratia liquefaciens MT49 0.16 IAI46_20915 oxidative stress defense protein 0.37 IAI46_21195 ATP-dependent helicase HrpB low > 86
Pantoea sp. MT58 0.16 IAI47_03710 oxidative stress defense protein 0.35 IAI47_15620 ATP-dependent helicase HrpB low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF3017 Protein of unknown function DUF541 0.37 GFF84 ATP-dependent helicase HrpB low > 78
Enterobacter sp. TBS_079 0.15 MPMX20_03774 26 kDa periplasmic immunogenic protein 0.36 MPMX20_00834 ATP-dependent RNA helicase HrpB low > 85
Enterobacter asburiae PDN3 0.15 EX28DRAFT_2968 Uncharacterized conserved protein 0.37 EX28DRAFT_3737 ATP-dependent helicase HrpB low > 76
Escherichia fergusonii Becca 0.15 EFB2_00984 26 kDa periplasmic immunogenic protein 0.37 EFB2_03896 ATP-dependent RNA helicase HrpB low > 86
Escherichia coli ECRC101 0.15 OKFHMN_19415 yggE oxidative stress defense protein 0.37 OKFHMN_10330 hrpB ATP-dependent helicase HrpB — —
Escherichia coli ECRC102 0.15 NIAGMN_17180 yggE oxidative stress defense protein 0.37 NIAGMN_08180 hrpB ATP-dependent helicase HrpB — —
Escherichia coli ECRC98 0.15 JDDGAC_23045 yggE oxidative stress defense protein 0.37 JDDGAC_13925 hrpB ATP-dependent helicase HrpB — —
Escherichia coli ECRC62 0.15 BNILDI_09860 yggE oxidative stress defense protein 0.37 BNILDI_08995 hrpB ATP-dependent helicase HrpB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00794 26 kDa periplasmic immunogenic protein 0.37 OHPLBJKB_03514 hypothetical protein low > 73
Escherichia coli BL21 0.15 ECD_02753 oxidative stress defense protein 0.37 ECD_00147 putative ATP-dependent helicase low > 60
Escherichia coli ECRC101 0.15 MCAODC_09935 yggE oxidative stress defense protein 0.37 MCAODC_00845 hrpB ATP-dependent helicase HrpB — —
Escherichia coli BW25113 0.15 b2922 yggE hypothetical protein (NCBI) 0.37 b0148 hrpB helicase, ATP-dependent (VIMSS) low > 76
Escherichia coli ECOR38 0.15 HEPCGN_18720 yggE oxidative stress defense protein 0.37 HEPCGN_08280 hrpB ATP-dependent helicase HrpB low > 85
Escherichia coli ECRC99 0.15 KEDOAH_08725 yggE oxidative stress defense protein 0.37 KEDOAH_17825 hrpB ATP-dependent helicase HrpB — —
Escherichia coli ECOR27 0.15 NOLOHH_11325 yggE oxidative stress defense protein 0.37 NOLOHH_02675 hrpB ATP-dependent helicase HrpB low > 57
Escherichia coli Nissle 1917 0.15 ECOLIN_RS16240 oxidative stress defense protein 0.37 ECOLIN_RS00830 ATP-dependent helicase HrpB low > 52
Dickeya dadantii 3937 0.14 DDA3937_RS18495 oxidative stress defense protein 0.36 DDA3937_RS15920 ATP-dependent helicase HrpB low > 74
Alteromonas macleodii MIT1002 0.13 MIT1002_02021 26 kDa periplasmic immunogenic protein precursor 0.26 MIT1002_00406 ATP-dependent RNA helicase HrpB low > 70

Not shown: 3 genomes with orthologs for Atu2162 only; 33 genomes with orthologs for Atu0052 only