Conservation of cofitness between Sama_0887 and Sama_0176 in Shewanella amazonensis SB2B

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0887 hypothetical protein (RefSeq) 1.0 Sama_0176 general secretion pathway protein K (RefSeq) 0.44 5
Shewanella sp. ANA-3 0.85 Shewana3_3019 cytochrome c assembly protein (RefSeq) 0.76 Shewana3_0158 general secretion pathway protein K (RefSeq) low > 73
Shewanella oneidensis MR-1 0.84 SO1355 membrane protein, putative (NCBI ptt file) 0.76 SO0173 gspK general secretion pathway protein K (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.80 Shew_1061 cytochrome c assembly protein (RefSeq) 0.74 Shew_3612 general secretion pathway protein K (RefSeq) — —
Klebsiella pneumoniae MKP103 0.39 KDGMDA_02230 Cytochrome C assembly protein 0.24 KDGMDA_13310 type II secretion system minor pseudopilin GspK low > 95
Erwinia amylovora T8 0.39 OLJFJH_09645 Cytochrome C assembly protein 0.14 OLJFJH_01145 type II secretion system minor pseudopilin GspK low > 58
Escherichia coli BW25113 0.37 b2611 ypjD predicted inner membrane protein (RefSeq) 0.19 b3332 gspK general secretory pathway component, cryptic (NCBI) low > 76
Escherichia coli ECOR27 0.37 NOLOHH_12840 ypjD Inner membrane protein YpjD 0.24 NOLOHH_11010 gspK general secretion pathway protein K low > 76
Escherichia coli ECRC100 0.37 OKFHMN_21165 ypjD Inner membrane protein YpjD 0.22 OKFHMN_00250 gspK type II secretion system minor pseudopilin GspK low > 79
Escherichia coli ECRC98 0.37 JDDGAC_24830 ypjD Inner membrane protein YpjD 0.22 JDDGAC_30330 gspK type II secretion system minor pseudopilin GspK low > 87
Escherichia coli ECOR38 0.37 HEPCGN_20285 ypjD Inner membrane protein YpjD 0.24 HEPCGN_18085 gspK general secretion pathway protein K low > 88
Escherichia coli BL21 0.37 ECD_02500 cytochrome c assembly protein family inner membrane protein 0.26 ECD_02831 putative type II secretion protein GspK low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01095 Inner membrane protein YpjD 0.25 OHPLBJKB_00746 Putative type II secretion system protein K low > 74
Escherichia coli ECRC101 0.37 MCAODC_11695 ypjD Inner membrane protein YpjD 0.22 MCAODC_15300 gspK type II secretion system minor pseudopilin GspK low > 87
Escherichia coli ECRC102 0.37 NIAGMN_18935 ypjD Inner membrane protein YpjD 0.22 NIAGMN_28570 gspK type II secretion system minor pseudopilin GspK low > 80
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_02985 inner membrane protein YpjD 0.26 CSW01_13755 type II secretion system protein K — —
Escherichia fergusonii Becca 0.37 EFB2_01281 Inner membrane protein YpjD 0.24 EFB2_00852 Putative type II secretion system protein K low > 86
Klebsiella michiganensis M5al 0.37 BWI76_RS21535 inner membrane protein YpjD 0.20 BWI76_RS05055 type II secretion system protein K low > 92
Rahnella sp. WP5 0.37 EX31_RS07735 inner membrane protein YpjD 0.16 EX31_RS16200 type II secretion system minor pseudopilin GspK low > 89
Alteromonas macleodii MIT1002 0.35 MIT1002_01295 Inner membrane protein YpjD 0.31 MIT1002_03983 Putative general secretion pathway protein K low > 70
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2714 ABC-type uncharacterized transport system, permease component 0.15 EX28DRAFT_2072 Type II secretory pathway, component PulK low > 76
Pectobacterium carotovorum WPP14 0.34 HER17_RS05105 inner membrane protein YpjD 0.29 HER17_RS06720 type II secretion system minor pseudopilin GspK low > 75
Dickeya dianthicola ME23 0.32 DZA65_RS17390 inner membrane protein YpjD 0.29 DZA65_RS15645 type II secretion system minor pseudopilin GspK low > 75
Dickeya dianthicola 67-19 0.32 HGI48_RS16295 inner membrane protein YpjD 0.30 HGI48_RS14700 type II secretion system minor pseudopilin GspK low > 71
Dickeya dadantii 3937 0.32 DDA3937_RS16185 inner membrane protein YpjD 0.30 DDA3937_RS14765 type II secretion system minor pseudopilin GspK 0.70 47
Acinetobacter baumannii LAC-4 0.24 RR41_RS15305 cytochrome c biogenesis protein CcsA 0.20 RR41_RS12100 type II secretion system minor pseudopilin GspK low > 55
Pseudomonas putida KT2440 0.23 PP_1460 putative Membrane protein 0.13 PP_1042 Type II secretion system protein K low > 96
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_04395 cytochrome C assembly protein 0.11 AO353_12580 type II secretory protein PulK — —
Pseudomonas sp. DMC3 0.23 GFF1980 Inner membrane protein YpjD 0.09 GFF2992 Type II secretion system protein K low > 89
Pseudomonas sp. BP01 0.22 JOY50_RS11665 inner membrane protein YpjD 0.14 JOY50_RS11550 gspK type II secretion system minor pseudopilin GspK low > 84
Marinobacter adhaerens HP15 0.22 HP15_756 cytochrome c assembly protein 0.21 HP15_1608 general secretion pathway protein K-like protein low > 73
Pseudomonas sp. S08-1 0.22 OH686_17715 Inner membrane protein YpjD 0.21 OH686_11755 General secretion pathway protein K low > 80
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS24590 cytochrome c assembly protein 0.09 PFLU_RS15765 general secretion pathway protein GspK low > 109
Pseudomonas sp. SVBP6 0.21 COO64_RS04870 inner membrane protein YpjD 0.14 COO64_RS04755 gspK type II secretion system minor pseudopilin GspK low > 93
Pseudomonas fluorescens SBW25 0.21 PFLU_RS24590 cytochrome c assembly protein 0.09 PFLU_RS15765 general secretion pathway protein GspK low > 109
Acinetobacter radioresistens SK82 0.21 MPMX26_02469 Inner membrane protein YpjD 0.19 MPMX26_01229 Type II secretion system protein K — —
Pseudomonas stutzeri RCH2 0.21 Psest_3135 ABC-type uncharacterized transport system, permease component 0.22 Psest_4196 Type II secretory pathway, component PulK — —
Pseudomonas simiae WCS417 0.21 PS417_22930 cytochrome C assembly protein 0.08 PS417_11280 HxcX atypical pseudopilin — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_06415 cytochrome C assembly protein 0.10 AO356_24775 HxcX atypical pseudopilin low > 104
Pseudomonas fluorescens FW300-N2E2 0.20 Pf6N2E2_3151 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.08 Pf6N2E2_648 General secretion pathway protein K low > 103
Pseudomonas aeruginosa PUPa3 0.19 DQ20_RS42890 inner membrane protein YpjD 0.18 DQ20_RS34115 xcpX;inference=COORDINATES GspK family T2SS minor pseudopilin variant XcpX low > 101
Pseudomonas aeruginosa MRSN321 0.19 DY961_RS14235 inner membrane protein YpjD 0.18 DY961_RS01440 xcpX;inference=COORDINATES GspK family T2SS minor pseudopilin variant XcpX low > 100
Pseudomonas aeruginosa PA14 0.19 IKLFDK_19130 inner membrane protein YpjD 0.18 IKLFDK_15760 GspK family T2SS minor pseudopilin variant XcpX low > 98
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_2259 ABC-type uncharacterized transport system, permease component 0.23 B158DRAFT_0696 Type II secretory pathway, component PulK low > 40

Not shown: 27 genomes with orthologs for Sama_0887 only; 6 genomes with orthologs for Sama_0176 only