Conservation of cofitness between Shew_2451 and Shew_2449 in Shewanella loihica PV-4

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2451 patatin (RefSeq) 1.0 Shew_2449 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.37 11
Shewanella amazonensis SB2B 0.64 Sama_1274 hypothetical protein (RefSeq) 0.84 Sama_1275 anaerobic ribonucleoside triphosphate reductase (RefSeq) low > 62
Shewanella sp. ANA-3 0.58 Shewana3_2605 patatin (RefSeq) 0.89 Shewana3_2603 anaerobic ribonucleoside triphosphate reductase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO2836 conserved hypothetical protein (NCBI ptt file) 0.89 SO2834 nrdD anaerobic ribonucleoside-triphosphate reductase (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.41 HER17_RS11055 patatin-like phospholipase RssA 0.81 HER17_RS19525 anaerobic ribonucleoside-triphosphate reductase low > 75
Klebsiella pneumoniae MKP103 0.41 KDGMDA_24510 patatin-like phospholipase RssA 0.80 KDGMDA_11405 anaerobic ribonucleoside-triphosphate reductase low > 95
Dickeya dadantii 3937 0.40 DDA3937_RS10335 patatin-like phospholipase RssA 0.80 DDA3937_RS01875 anaerobic ribonucleoside-triphosphate reductase low > 74
Dickeya dianthicola 67-19 0.40 HGI48_RS10345 patatin-like phospholipase RssA 0.80 HGI48_RS01825 anaerobic ribonucleoside-triphosphate reductase low > 71
Dickeya dianthicola ME23 0.40 DZA65_RS10820 patatin-like phospholipase RssA 0.80 DZA65_RS01880 anaerobic ribonucleoside-triphosphate reductase low > 75
Pantoea sp. MT58 0.39 IAI47_09020 patatin-like phospholipase RssA 0.76 IAI47_16925 anaerobic ribonucleoside-triphosphate reductase low > 76
Escherichia coli ECRC102 0.39 NIAGMN_27655 rssA patatin-like phospholipase RssA 0.80 NIAGMN_09755 nrdD anaerobic ribonucleoside-triphosphate reductase low > 80
Escherichia coli ECOR27 0.39 NOLOHH_20470 rssA patatin-like phospholipase RssA 0.80 NOLOHH_04170 nrdD anaerobic ribonucleoside-triphosphate reductase low > 76
Escherichia coli ECRC98 0.39 JDDGAC_05995 rssA patatin-like phospholipase RssA 0.80 JDDGAC_15545 nrdD anaerobic ribonucleoside-triphosphate reductase low > 87
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS02860 patatin-like phospholipase RssA 0.76 PagCFBP13505_RS09020 anaerobic ribonucleoside-triphosphate reductase low > 74
Escherichia coli ECRC101 0.39 MCAODC_21680 rssA patatin-like phospholipase RssA 0.80 MCAODC_02410 nrdD anaerobic ribonucleoside-triphosphate reductase low > 88
Escherichia coli ECOR38 0.39 HEPCGN_25040 rssA patatin-like phospholipase RssA 0.80 HEPCGN_10100 nrdD anaerobic ribonucleoside-triphosphate reductase low > 88
Escherichia coli ECRC100 0.39 OKFHMN_28580 rssA patatin-like phospholipase RssA 0.80 OKFHMN_11905 nrdD anaerobic ribonucleoside-triphosphate reductase low > 79
Escherichia coli BW25113 0.39 b1234 rssA conserved protein (RefSeq) 0.80 b4238 nrdD anaerobic ribonucleoside triphosphate reductase (NCBI) low > 76
Escherichia coli ECRC62 0.39 BNILDI_18625 rssA patatin-like phospholipase RssA 0.80 BNILDI_07340 nrdD anaerobic ribonucleoside-triphosphate reductase low > 75
Escherichia coli BL21 0.39 ECD_01210 putative patatin-like family phospholipase 0.80 ECD_04106 anaerobic ribonucleoside-triphosphate reductase low > 61
Escherichia coli ECRC99 0.39 KEDOAH_25575 rssA patatin-like phospholipase RssA 0.80 KEDOAH_16250 nrdD anaerobic ribonucleoside-triphosphate reductase — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS07470 patatin-like phospholipase RssA 0.80 ECOLIN_RS24585 anaerobic ribonucleoside-triphosphate reductase low > 55
Escherichia fergusonii Becca 0.39 EFB2_02692 putative NTE family protein 0.80 EFB2_04295 Anaerobic ribonucleoside-triphosphate reductase 0.33 72
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_02451 putative NTE family protein 0.80 OHPLBJKB_03797 Anaerobic ribonucleoside-triphosphate reductase low > 74
Rahnella sp. WP5 0.39 EX31_RS10105 patatin-like phospholipase RssA 0.83 EX31_RS08395 anaerobic ribonucleoside-triphosphate reductase low > 89
Serratia liquefaciens MT49 0.39 IAI46_14255 patatin-like phospholipase RssA 0.83 IAI46_02135 anaerobic ribonucleoside-triphosphate reductase low > 86
Klebsiella michiganensis M5al 0.39 BWI76_RS17280 patatin family protein 0.80 BWI76_RS02935 anaerobic ribonucleoside triphosphate reductase low > 92
Enterobacter sp. TBS_079 0.39 MPMX20_02594 putative NTE family protein 0.80 MPMX20_00531 Anaerobic ribonucleoside-triphosphate reductase low > 85
Enterobacter asburiae PDN3 0.39 EX28DRAFT_0860 Predicted esterase of the alpha-beta hydrolase superfamily 0.80 EX28DRAFT_3437 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF2754 UPF0028 protein YchK 0.80 GFF919 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) low > 78
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_310 UPF0028 protein YchK 0.09 Pf1N1B4_5729 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) low > 87
Pseudomonas simiae WCS417 0.27 PS417_08310 alpha/beta hydrolase 0.10 PS417_15690 ribonucleoside-triphosphate reductase low > 88
Pseudomonas lactucae CFBP13502 0.27 GEMAOFIL_01791 putative NTE family protein 0.09 GEMAOFIL_03418 Anaerobic ribonucleoside-triphosphate reductase low > 93
Pseudomonas stutzeri RCH2 0.26 Psest_2463 Predicted esterase of the alpha-beta hydrolase superfamily 0.09 Psest_0840 anaerobic ribonucleoside-triphosphate reductase low > 67
Pseudomonas sp. SVBP6 0.26 COO64_RS09710 patatin-like phospholipase family protein 0.09 COO64_RS14260 ribonucleoside triphosphate reductase low > 93
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_18940 alpha/beta hydrolase 0.09 AO353_22125 anaerobic ribonucleoside-triphosphate reductase low > 101
Pseudomonas aeruginosa PA14 0.25 IKLFDK_07865 alpha/beta hydrolase 0.10 IKLFDK_09385 ribonucleoside triphosphate reductase low > 100
Pseudomonas sp. RS175 0.25 PFR28_00944 putative NTE family protein 0.09 PFR28_01638 Anaerobic ribonucleoside-triphosphate reductase low > 88
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_03290 alpha/beta hydrolase 0.09 AO356_25235 anaerobic ribonucleoside-triphosphate reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_2489 UPF0028 protein YchK 0.09 Pf6N2E2_735 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) low > 103

Not shown: 31 genomes with orthologs for Shew_2451 only; 24 genomes with orthologs for Shew_2449 only