Conservation of cofitness between BT4331 and BT4330 in Bacteroides thetaiotaomicron VPI-5482

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT4331 conserved hypothetical protein (NCBI ptt file) 1.0 BT4330 xanthosine permease (NCBI ptt file) 0.65 3
Bacteroides ovatus ATCC 8483 0.97 BACOVA_05134 hypothetical protein 0.95 BACOVA_05132 nucleoside transporter low > 94
Bacteroides stercoris CC31F 0.87 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase 0.53 HMPREF1181_RS05930 MFS transporter low > 56
Phocaeicola dorei CL03T12C01 0.86 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase 0.52 ABI39_RS18160 MFS transporter low > 72
Phocaeicola vulgatus CL09T03C04 0.84 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase 0.52 HMPREF1058_RS05930 MFS transporter low > 67
Parabacteroides merdae CL09T00C40 0.76 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase 0.19 HMPREF1078_RS12620 MFS transporter low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_3350 Predicted SAM-dependent methyltransferases 0.30 Echvi_1845 2-hydroxy-3-keto-glucal transporter (from data) low > 79
Klebsiella michiganensis M5al 0.34 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.56 BWI76_RS20600 nucleoside permease low > 92
Enterobacter asburiae PDN3 0.33 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.54 EX28DRAFT_3001 nucleoside transporter low > 76
Enterobacter sp. TBS_079 0.33 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.54 MPMX20_03299 Xanthosine permease low > 85
Pantoea sp. MT58 0.33 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.23 IAI47_20340 MFS transporter low > 76
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase 0.57 CA265_RS08855 MFS transporter low > 88
Erwinia tracheiphila SCR3 0.32 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.19 LU632_RS17835 MFS transporter low > 74
Rahnella sp. WP5 0.32 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.22 EX31_RS16880 MFS transporter low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF3258 LSU m5C1962 methyltransferase RlmI 0.54 GFF3069 Nucleoside permease NupG low > 78
Escherichia coli ECRC62 0.32 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 BNILDI_09630 nupG nucleoside permease NupG low > 75
Escherichia coli ECRC98 0.32 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 JDDGAC_22815 nupG nucleoside permease NupG low > 86
Escherichia coli BL21 0.32 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.52 ECD_02794 nucleoside transporter low > 61
Escherichia coli ECRC100 0.32 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 OKFHMN_19185 nupG nucleoside permease NupG low > 80
Escherichia coli ECRC102 0.32 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 NIAGMN_16950 nupG nucleoside permease NupG — —
Escherichia coli ECRC99 0.32 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 KEDOAH_08955 nupG nucleoside permease NupG — —
Serratia liquefaciens MT49 0.32 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.56 IAI46_21845 nucleoside permease low > 86
Escherichia coli BW25113 0.32 b0967 yccW predicted methyltransferase (RefSeq) 0.53 b2406 xapB xanthosine transporter (NCBI) low > 76
Escherichia coli ECRC101 0.32 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.52 MCAODC_09705 nupG nucleoside permease NupG low > 87
Escherichia coli ECOR27 0.32 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.53 NOLOHH_13925 xapB xanthosine/proton symporter XapB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.52 OHPLBJKB_00752 Nucleoside permease NupG low > 73
Escherichia coli Nissle 1917 0.32 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.53 ECOLIN_RS13825 xanthosine/proton symporter XapB — —
Escherichia coli ECOR38 0.32 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.57 HEPCGN_21435 MFS transporter low > 87
Alteromonas macleodii MIT1002 0.32 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.32 MIT1002_00366 Putative nucleoside transporter YegT low > 70
Escherichia fergusonii Becca 0.32 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.53 EFB2_01471 Xanthosine permease low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase 0.57 ABZR88_RS10110 nucleoside permease low > 71
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase 0.57 ABZR86_RS11515 nucleoside permease low > 74
Rhodanobacter denitrificans FW104-10B01 0.22 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.57 LRK54_RS12165 nucleoside permease 0.43 44
Rhodanobacter denitrificans MT42 0.21 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.57 LRK55_RS11900 nucleoside permease low > 63
Pseudomonas fluorescens FW300-N2E2 0.20 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.28 Pf6N2E2_326 Putative nucleoside transporter YegT low > 103
Pseudomonas sp. RS175 0.20 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.28 PFR28_02581 Putative nucleoside transporter YegT low > 88
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_13260 SAM-dependent methyltransferase 0.28 AO356_22300 MFS transporter 0.23 84
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.29 Pf1N1B4_4098 Putative nucleoside transporter yegT low > 87
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.58 OKGIIK_11760 Nucleoside permease low > 52

Not shown: 42 genomes with orthologs for BT4331 only; 7 genomes with orthologs for BT4330 only