Conservation of cofitness between b1184 and b2616 in Escherichia coli BW25113

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1184 umuC DNA polymerase V subunit UmuC (NCBI) 1.0 b2616 recN recombination and repair protein (NCBI) 0.29 18
Escherichia coli ECOR27 1.00 NOLOHH_20750 umuC DNA polymerase V catalytic protein 1.00 NOLOHH_12815 recN DNA repair protein RecN — —
Escherichia coli BL21 1.00 ECD_01159 translesion error-prone DNA polymerase V subunit; DNA polymerase activity 1.00 ECD_02504 recombination and repair protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02505 Protein UmuC 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC62 0.99 BNILDI_18915 umuC DNA polymerase V catalytic protein 1.00 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.99 OKFHMN_28265 umuC DNA polymerase V catalytic protein 0.99 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia coli ECRC98 0.99 JDDGAC_06245 umuC DNA polymerase V catalytic protein 0.99 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli ECOR38 0.99 HEPCGN_24725 umuC DNA polymerase V catalytic protein 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 85
Escherichia coli ECRC102 0.99 NIAGMN_27955 umuC DNA polymerase V catalytic protein 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC99 0.99 KEDOAH_25280 umuC DNA polymerase V catalytic protein 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.99 MCAODC_21905 umuC DNA polymerase V catalytic protein 0.99 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli Nissle 1917 0.98 ECOLIN_RS07160 DNA polymerase V catalytic protein 0.99 ECOLIN_RS14775 DNA repair protein RecN — —
Escherichia fergusonii Becca 0.98 EFB2_02748 Protein UmuC 0.99 EFB2_01277 DNA repair protein RecN low > 86
Klebsiella michiganensis M5al 0.87 BWI76_RS12385 DNA polymerase V subunit UmuC 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Enterobacter asburiae PDN3 0.87 EX28DRAFT_1261 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.86 EX28DRAFT_2719 DNA repair protein RecN low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF3989 Error-prone, lesion bypass DNA polymerase V (UmuC) 0.92 GFF4162 DNA repair protein RecN low > 78
Rahnella sp. WP5 0.68 EX31_RS00805 translesion error-prone DNA polymerase V subunit UmuC 0.75 EX31_RS21760 DNA repair protein RecN low > 89
Enterobacter sp. TBS_079 0.66 MPMX20_02045 Protein UmuC 0.85 MPMX20_03486 DNA repair protein RecN low > 85
Serratia liquefaciens MT49 0.65 IAI46_15980 translesion error-prone DNA polymerase V subunit UmuC 0.77 IAI46_19635 DNA repair protein RecN low > 86
Pantoea sp. MT58 0.64 IAI47_10585 translesion error-prone DNA polymerase V subunit UmuC 0.77 IAI47_04810 DNA repair protein RecN low > 76
Erwinia tracheiphila SCR3 0.56 LU632_RS01730 umuC translesion error-prone DNA polymerase V subunit UmuC 0.73 LU632_RS16985 recN DNA repair protein RecN low > 74
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_1425 DNA-directed DNA polymerase 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_1425 DNA-directed DNA polymerase 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas sp. RS175 0.44 PFR28_01192 Protein UmuC 0.39 PFR28_00071 DNA repair protein RecN 0.39 45
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_1550 umuC DNA-directed DNA polymerase 0.23 Synpcc7942_1779 recN DNA repair protein RecN low > 38
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_21210 SOS mutagenesis and repair protein UmuC 0.21 CA264_13235 DNA repair protein RecN 0.61 11
Pseudomonas sp. S08-1 0.39 OH686_22885 Error-prone, lesion bypass DNA polymerase V (UmuC) 0.39 OH686_17050 DNA repair protein RecN low > 80
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_1835 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.46 9
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS12020 hypothetical protein 0.23 CA265_RS14855 DNA repair protein RecN low > 88
Shewanella sp. ANA-3 0.36 Shewana3_1832 DNA-repair protein (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.36 LRK55_RS18255 Y-family DNA polymerase 0.33 LRK55_RS17815 DNA repair protein RecN low > 63
Magnetospirillum magneticum AMB-1 0.36 AMB_RS10435 DUF4113 domain-containing protein 0.27 AMB_RS19520 DNA repair protein RecN — —
Shewanella oneidensis MR-1 0.36 SOA0012 umuC umuC protein (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_5450 Error-prone, lesion bypass DNA polymerase V (UmuC) 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.35 10
Bosea sp. OAE506 0.35 ABIE41_RS06700 Y-family DNA polymerase 0.24 ABIE41_RS12645 DNA repair protein RecN low > 77
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_3541 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.25 Ga0059261_1026 DNA repair protein RecN low > 68
Desulfovibrio vulgaris Miyazaki F 0.34 DvMF_1434 DNA-directed DNA polymerase (RefSeq) 0.09 DvMF_0923 SMC domain protein (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU2906 umuC umuC protein (TIGR) 0.17 DVU2463 recN DNA repair protein RecN (TIGR) low > 55

Not shown: 0 genomes with orthologs for b1184 only; 62 genomes with orthologs for b2616 only