Conservation of cofitness between b3092 and b3994 in Escherichia coli BW25113

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3092 uxaC glucuronate isomerase (NCBI) 1.0 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.32 10
Escherichia coli BL21 1.00 ECD_02961 uronate isomerase 0.99 ECD_03871 phosphomethylpyrimidine synthase low > 60
Escherichia fergusonii Becca 1.00 EFB2_00720 Uronate isomerase 0.99 EFB2_04617 Phosphomethylpyrimidine synthase low > 86
Escherichia coli ECOR38 1.00 HEPCGN_17375 uxaC glucuronate isomerase 0.99 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00610 Uronate isomerase 1.00 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Escherichia coli Nissle 1917 1.00 ECOLIN_RS17830 glucuronate isomerase 0.99 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC low > 52
Escherichia coli ECRC101 1.00 MCAODC_09035 uxaC glucuronate isomerase 0.99 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC101 1.00 OKFHMN_18520 uxaC glucuronate isomerase 0.99 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC102 1.00 NIAGMN_16285 uxaC glucuronate isomerase 0.99 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECOR27 1.00 NOLOHH_10320 uxaC glucuronate isomerase 1.00 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC low > 57
Escherichia coli ECRC98 1.00 JDDGAC_22155 uxaC glucuronate isomerase 0.99 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC99 1.00 KEDOAH_09625 uxaC glucuronate isomerase 0.99 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC62 1.00 BNILDI_01195 uxaC glucuronate isomerase 1.00 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC — —
Klebsiella michiganensis M5al 0.97 BWI76_RS24730 uronate isomerase 0.93 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC low > 92
Enterobacter sp. TBS_079 0.96 MPMX20_04001 Uronate isomerase 0.95 MPMX20_00217 Phosphomethylpyrimidine synthase low > 85
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3160 Glucuronate isomerase 0.95 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Pectobacterium carotovorum WPP14 0.91 HER17_RS18715 glucuronate isomerase 0.87 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.72 22
Dickeya dadantii 3937 0.89 DDA3937_RS02825 glucuronate isomerase 0.85 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.45 34
Dickeya dianthicola ME23 0.89 DZA65_RS02965 glucuronate isomerase 0.85 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.70 4
Dickeya dianthicola 67-19 0.89 HGI48_RS02800 glucuronate isomerase 0.84 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.79 10
Rahnella sp. WP5 0.84 EX31_RS12675 glucuronate isomerase 0.86 EX31_RS16815 phosphomethylpyrimidine synthase ThiC low > 89
Pantoea sp. MT58 0.80 IAI47_02910 glucuronate isomerase 0.84 IAI47_18085 phosphomethylpyrimidine synthase ThiC low > 76
Serratia liquefaciens MT49 0.80 IAI46_22220 glucuronate isomerase 0.84 IAI46_01320 phosphomethylpyrimidine synthase ThiC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF3095 Uronate isomerase (EC 5.3.1.12) 0.95 GFF4198 Thiamin biosynthesis protein ThiC low > 78
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS15475 glucuronate isomerase 0.57 ABI39_RS17760 phosphomethylpyrimidine synthase ThiC low > 72
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS01590 glucuronate isomerase 0.57 HMPREF1058_RS03280 phosphomethylpyrimidine synthase ThiC low > 67
Bacteroides thetaiotaomicron VPI-5482 0.55 BT_0823 glucuronate isomerase (RefSeq) 0.57 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.55 BACOVA_02558 glucuronate isomerase 0.57 BACOVA_02358 thiamine biosynthesis protein ThiC 0.34 43
Mucilaginibacter yixingensis YX-36 DSM 26809 0.55 ABZR88_RS16135 glucuronate isomerase 0.70 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC low > 71
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS14420 glucuronate isomerase 0.56 HMPREF1181_RS14685 phosphomethylpyrimidine synthase ThiC low > 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_3072 Glucuronate isomerase 0.69 Echvi_3567 thiamine biosynthesis protein ThiC 0.36 54
Parabacteroides merdae CL09T00C40 0.52 HMPREF1078_RS05615 glucuronate isomerase 0.57 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS19870 Glucuronate isomerase (EC 5.3.1.12) (from data) 0.68 CA265_RS20165 phosphomethylpyrimidine synthase ThiC low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_13950 glucuronate isomerase 0.70 CA264_20435 phosphomethylpyrimidine synthase ThiC low > 74
Azospirillum sp. SherDot2 0.16 MPMX19_05792 Uronate isomerase 0.63 MPMX19_00336 Phosphomethylpyrimidine synthase low > 112
Azospirillum brasilense Sp245 0.16 AZOBR_RS31425 glucuronate isomerase 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase low > 97
Bosea sp. OAE506 0.16 ABIE41_RS07850 glucuronate isomerase 0.59 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS07745 glucuronate isomerase 0.62 A4249_RS15715 phosphomethylpyrimidine synthase ThiC low > 48
Alteromonas macleodii MIT1002 0.15 MIT1002_02431 Uronate isomerase 0.75 MIT1002_00097 Phosphomethylpyrimidine synthase low > 70
Caulobacter crescentus NA1000 Δfur 0.15 CCNA_01557 uronate isomerase 0.64 CCNA_02109 thiamine biosynthesis protein thiC low > 67
Caulobacter crescentus NA1000 0.15 CCNA_01557 uronate isomerase 0.64 CCNA_02109 thiamine biosynthesis protein thiC low > 66
Lysobacter sp. OAE881 0.15 ABIE51_RS03680 glucuronate isomerase 0.68 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC low > 62
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_2969 Glucuronate isomerase 0.62 Ga0059261_2424 hydroxymethylpyrimidine synthase low > 68
Xanthomonas campestris pv. campestris strain 8004 0.13 Xcc-8004.5237.1 Uronate isomerase (EC 5.3.1.12) 0.67 Xcc-8004.1066.1 hypothetical protein low > 74
Sinorhizobium meliloti 1021 0.13 SM_b21354 glucuronate isomerase 0.63 SM_b20615 thiamine biosynthesis protein ThiC low > 103

Not shown: 1 genomes with orthologs for b3092 only; 49 genomes with orthologs for b3994 only