Conservation of cofitness between b0756 and b3965 in Escherichia coli BW25113

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0756 galM galactose-1-epimerase (mutarotase) (NCBI) 1.0 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) 0.18 17
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02957 Aldose 1-epimerase 1.00 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 73
Escherichia coli ECOR27 1.00 NOLOHH_23160 galM galactose-1-epimerase 1.00 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.57 45
Escherichia coli ECRC62 1.00 BNILDI_21155 galM galactose-1-epimerase 1.00 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECOR38 1.00 HEPCGN_01545 galM galactose-1-epimerase 0.99 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 85
Escherichia coli Nissle 1917 0.99 ECOLIN_RS04025 galactose-1-epimerase 0.99 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 52
Escherichia fergusonii Becca 0.99 EFB2_03350 Aldose 1-epimerase 0.99 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_04780 galM galactose-1-epimerase 1.00 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC101 0.99 MCAODC_25950 galM galactose-1-epimerase 0.99 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC98 0.99 JDDGAC_10385 galM galactose-1-epimerase 1.00 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC101 0.99 OKFHMN_06730 galM galactose-1-epimerase 1.00 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC99 0.99 KEDOAH_21235 galM galactose-1-epimerase 1.00 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF649 Aldose 1-epimerase (EC 5.1.3.3) 0.94 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2239 galactose mutarotase 0.92 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_01383 Aldose 1-epimerase 0.93 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS08610 galactose-1-epimerase 0.93 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 92
Erwinia tracheiphila SCR3 0.63 LU632_RS15915 galM galactose-1-epimerase 0.78 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Pantoea sp. MT58 0.63 IAI47_13595 galactose-1-epimerase 0.83 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Dickeya dadantii 3937 0.61 DDA3937_RS06600 galactose-1-epimerase 0.81 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Dickeya dianthicola ME23 0.60 DZA65_RS06975 galactose-1-epimerase 0.80 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Serratia liquefaciens MT49 0.59 IAI46_06420 galactose-1-epimerase 0.82 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Rahnella sp. WP5 0.59 EX31_RS23565 galactose-1-epimerase 0.77 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 89
Dickeya dianthicola 67-19 0.59 HGI48_RS06620 galactose-1-epimerase 0.80 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Pectobacterium carotovorum WPP14 0.58 HER17_RS14770 galactose-1-epimerase 0.80 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_07995 galactose-1-epimerase 0.65 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 62
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_84 Aldose 1-epimerase (EC 5.1.3.3) 0.47 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_2369 aldose 1-epimerase 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas fluorescens SBW25 0.32 PFLU_RS11665 galactose mutarotase 0.47 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS11665 galactose mutarotase 0.47 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas simiae WCS417 0.32 PS417_11040 aldose epimerase 0.48 PS417_24385 tRNA (uracil-5-)-methyltransferase low > 88
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_2369 aldose 1-epimerase 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_01315 aldose epimerase 0.47 AO356_15600 tRNA (uracil-5-)-methyltransferase low > 104
Pseudomonas sp. RS175 0.31 PFR28_01305 Aldose 1-epimerase 0.48 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_2135 Aldose 1-epimerase (EC 5.1.3.3) 0.48 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 103
Shewanella amazonensis SB2B 0.30 Sama_0535 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.60 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.29 SO0693 galM aldose 1-epimerase (NCBI ptt file) 0.60 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.28 Shewana3_3579 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.60 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.27 Shew_3272 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.61 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.25 MIT1002_00187 Aldose 1-epimerase precursor 0.59 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase low > 70

Not shown: 33 genomes with orthologs for b0756 only; 8 genomes with orthologs for b3965 only