Homologs of PFR28_00263 from Pseudomonas sp. RS175

HTH-type transcriptional activator RhaR
SEED: DNA-binding response regulator, AraC family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas sp. RS175 PFR28_00263 HTH-type transcriptional activator RhaR insig. 100 100
o Pseudomonas fluorescens FW300-N2C3 AO356_06800 AraC family transcriptional regulator insig. 90 95
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3213 DNA-binding response regulator, AraC family insig. 86 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS03625 response regulator insig. 59 88
o Burkholderia phytofirmans PsJN BPHYT_RS11870 AraC family transcriptional regulator insig. 48 91
o Paraburkholderia graminis OAS925 ABIE53_004362 DNA-binding response OmpR family regulator insig. 46 90
o Variovorax sp. SCN45 GFF5870 hypothetical protein cofit 46 87
o Herbaspirillum seropedicae SmR1 HSERO_RS06860 AraC family transcriptional regulator sig. 39 87
  Bacteroides ovatus ATCC 8483 BACOVA_03441 response regulator receiver domain protein insig. 30 86
  Bacteroides ovatus ATCC 8483 BACOVA_02648 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein cofit 30 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07185 two-component regulator propeller domain-containing protein insig. 31 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS12050 response regulator insig. 30 86
  Bacteroides thetaiotaomicron VPI-5482 BT4236 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 28 90
  Phocaeicola dorei CL03T12C01 ABI39_RS00165 response regulator strong 28 88
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12385 two-component regulator propeller domain-containing protein insig. 30 88
  Bacteroides stercoris CC31F HMPREF1181_RS08430 response regulator insig. 31 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06780 hybrid sensor histidine kinase/response regulator insig. 28 88
  Bacteroides thetaiotaomicron VPI-5482 BT4124 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 27 94
  Bacteroides ovatus ATCC 8483 BACOVA_04394 response regulator receiver domain protein strong 29 88
  Bacteroides ovatus ATCC 8483 BACOVA_03562 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 29 88
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10730 response regulator insig. 26 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11435 two-component regulator propeller domain-containing protein insig. 28 88
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4346 Signal transduction histidine kinase insig. 30 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS17305 hybrid sensor histidine kinase/response regulator transcription factor cofit 28 87
  Bacteroides stercoris CC31F HMPREF1181_RS08895 response regulator insig. 27 87
  Phocaeicola dorei CL03T12C01 ABI39_RS06370 response regulator insig. 26 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS05430 hybrid sensor histidine kinase/response regulator transcription factor insig. 28 88
  Bacteroides thetaiotaomicron VPI-5482 BT4111 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) strong 27 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2811 ABC-type sugar transport system, periplasmic component strong 30 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS08110 response regulator insig. 29 87
  Bacteroides stercoris CC31F HMPREF1181_RS06690 response regulator sig. 28 88
  Bacteroides stercoris CC31F HMPREF1181_RS08885 response regulator strong 26 94
  Bacteroides thetaiotaomicron VPI-5482 BT3049 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) cofit 27 87
  Bacteroides ovatus ATCC 8483 BACOVA_04931 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 27 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02485 hypothetical protein insig. 32 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3754 Signal transduction histidine kinase insig. 30 90
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07305 hybrid sensor histidine kinase/response regulator transcription factor insig. 27 89
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS08780 hybrid sensor histidine kinase/response regulator transcription factor insig. 29 86
  Bacteroides stercoris CC31F HMPREF1181_RS02790 response regulator insig. 28 87
  Bacteroides thetaiotaomicron VPI-5482 BT0267 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) sig. 28 87
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10050 response regulator insig. 28 90
  Bacteroides ovatus ATCC 8483 BACOVA_02667 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 25 88
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS08500 hybrid sensor histidine kinase/response regulator transcription factor insig. 29 87
  Paraburkholderia sabiae LMG 24235 QEN71_RS32075 response regulator insig. 39 46
  Bacteroides thetaiotaomicron VPI-5482 BT3800 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 29 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14215 hypothetical protein insig. 27 96
  Bacteroides ovatus ATCC 8483 BACOVA_03437 response regulator receiver domain protein sig. 26 88
  Burkholderia phytofirmans PsJN BPHYT_RS30905 histidine kinase insig. 39 47
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00635 substrate-binding domain-containing protein strong 28 86
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02180 two-component regulator propeller domain-containing protein insig. 27 90
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13580 response regulator strong 27 87
  Bacteroides ovatus ATCC 8483 BACOVA_05479 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 27 88
  Phocaeicola dorei CL03T12C01 ABI39_RS06700 response regulator insig. 28 90
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10265 hypothetical protein insig. 27 86
  Bacteroides stercoris CC31F HMPREF1181_RS05670 substrate-binding domain-containing protein strong 30 91
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15110 response regulator insig. 28 88
  Bacteroides ovatus ATCC 8483 BACOVA_04904 response regulator receiver domain protein cofit 25 87
  Bacteroides thetaiotaomicron VPI-5482 BT1754 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) strong 28 87
  Bacteroides stercoris CC31F HMPREF1181_RS08545 response regulator insig. 27 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08595 response regulator insig. 29 87
  Acidovorax sp. GW101-3H11 Ac3H11_4352 Response regulator insig. 41 44
  Bacteroides thetaiotaomicron VPI-5482 BT4663 two-component system sensor histidine kinase/response (NCBI ptt file) strong 27 88
  Phocaeicola dorei CL03T12C01 ABI39_RS09170 response regulator cofit 26 87
  Phocaeicola dorei CL03T12C01 ABI39_RS00800 response regulator strong 29 95
  Phocaeicola dorei CL03T12C01 ABI39_RS02825 response regulator insig. 28 87
  Pseudomonas sp. S08-1 OH686_07455 Response regulator c-di-GMP phosphodiesterase, RpfG family insig. 42 45
  Phocaeicola dorei CL03T12C01 ABI39_RS02675 response regulator insig. 25 88
  Bacteroides ovatus ATCC 8483 BACOVA_03646 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 27 86
  Bacteroides ovatus ATCC 8483 BACOVA_04371 response regulator receiver domain protein insig. 28 86
  Bacteroides thetaiotaomicron VPI-5482 BT1635 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 27 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13565 hybrid sensor histidine kinase/response regulator transcription factor insig. 27 87
  Magnetospirillum magneticum AMB-1 AMB_RS09305 two-component system response regulator insig. 42 43
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00710 hypothetical protein insig. 29 86
  Bacteroides ovatus ATCC 8483 BACOVA_05614 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 26 88
  Bacteroides ovatus ATCC 8483 BACOVA_03582 response regulator receiver domain protein insig. 26 87
  Magnetospirillum magneticum AMB-1 AMB_RS20960 two-component system response regulator cofit 40 45
  Bacteroides ovatus ATCC 8483 BACOVA_02694 response regulator receiver domain protein insig. 28 82
  Bacteroides ovatus ATCC 8483 BACOVA_04496 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein strong 28 86
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1645 Signal transduction histidine kinase insig. 28 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08450 response regulator cofit 25 88
  Paraburkholderia graminis OAS925 ABIE53_004192 PAS domain S-box-containing protein strong 38 47
  Bacteroides thetaiotaomicron VPI-5482 BT4137 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) insig. 27 87
  Marinobacter adhaerens HP15 HP15_1054 multi-sensor signal transduction histidine kinase strong 35 45
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS06050 hypothetical protein insig. 27 87
  Bacteroides ovatus ATCC 8483 BACOVA_00493 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein insig. 25 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00820 response regulator no data 29 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00980 response regulator no data 29 95
  Magnetospirillum magneticum AMB-1 AMB_RS09310 two-component system response regulator insig. 40 44
  Variovorax sp. SCN45 GFF2488 Two-component transcriptional response regulator, LuxR family insig. 39 44
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS09180 DNA-binding response regulator no data 30 75
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_03106 PAS domain S-box-containing protein insig. 38 43
  Bacteroides thetaiotaomicron VPI-5482 BT0981 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) insig. 25 88
  Phocaeicola dorei CL03T12C01 ABI39_RS05725 response regulator insig. 24 87
  Variovorax sp. OAS795 ABID97_RS23505 response regulator transcription factor insig. 39 44
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13495 hybrid sensor histidine kinase/response regulator transcription factor insig. 28 86
  Azospirillum brasilense Sp245 AZOBR_RS22685 response regulator PleD (with diguanylate cyclase and response regulator receiver domains) (fragment) insig. 42 40
  Bacteroides ovatus ATCC 8483 BACOVA_02065 response regulator receiver domain protein insig. 29 87
  Phocaeicola dorei CL03T12C01 ABI39_RS08240 substrate-binding domain-containing protein strong 28 87
  Bacteroides ovatus ATCC 8483 BACOVA_03096 response regulator receiver domain protein insig. 27 87
  Bacteroides ovatus ATCC 8483 BACOVA_00976 response regulator receiver domain protein insig. 26 91