Homologs of PS417_05100 from Pseudomonas simiae WCS417

RNA polymerase sigma factor
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas simiae WCS417 PS417_05100 RNA polymerase sigma factor sig. 100 100
o Pseudomonas fluorescens SBW25 PFLU_RS05170 sigma-70 family RNA polymerase sigma factor insig. 95 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05170 sigma-70 family RNA polymerase sigma factor strong 95 100
o Pseudomonas orientalis W4I3 QF045_RS08085 sigma-70 family RNA polymerase sigma factor insig. 92 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01226 putative RNA polymerase sigma factor FecI cofit 93 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1008 FIG006045: Sigma factor, ECF subfamily insig. 86 99
o Pseudomonas sp. DMC3 GFF1889 putative RNA polymerase sigma factor FecI cofit 80 100
o Pseudomonas sp. RS175 PFR28_00232 putative RNA polymerase sigma factor FecI insig. 80 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5307 FIG006045: Sigma factor, ECF subfamily strong 80 100
o Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 81 98
o Pseudomonas sp. SVBP6 COO64_RS11370 sigma-70 family RNA polymerase sigma factor insig. 77 99
o Pseudomonas syringae pv. syringae B728a Psyr_1040 RNA polymerase sigma factor, ECF subfamily strong 75 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1040 RNA polymerase sigma factor, ECF subfamily insig. 75 98
o Pseudomonas putida KT2440 PP_4611 RNA polymerase sigma-70 factor, ECF subfamily sig. 75 98
o Pseudomonas aeruginosa MRSN321 DY961_RS13375 sigma-70 family RNA polymerase sigma factor insig. 69 94
o Pseudomonas aeruginosa PA14 IKLFDK_20100 RNA polymerase subunit sigma sig. 69 94
o Pseudomonas aeruginosa PUPa3 DQ20_RS48675 sigma-70 family RNA polymerase sigma factor insig. 69 94
o Paraburkholderia sabiae LMG 24235 QEN71_RS15135 sigma-70 family RNA polymerase sigma factor insig. 67 96
o Variovorax sp. SCN45 GFF1524 FIG006045: Sigma factor, ECF subfamily insig. 65 96
o Herbaspirillum seropedicae SmR1 HSERO_RS00175 RNA polymerase sigma factor insig. 63 99
  Pseudomonas aeruginosa MRSN321 DY961_RS28585 sigma-70 family RNA polymerase sigma factor insig. 56 95
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 56 95
  Pseudomonas aeruginosa PUPa3 DQ20_RS38070 sigma-70 family RNA polymerase sigma factor no data 56 95
  Pseudomonas sp. BP01 JOY50_RS26950 sigma-70 family RNA polymerase sigma factor insig. 53 97
o Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 56 92
  Variovorax sp. SCN45 GFF2431 RNA polymerase ECF-type sigma factor insig. 57 94
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 55 92
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2098 heme uptake regulator insig. 53 98
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 52 98
  Pseudomonas fluorescens FW300-N2C3 AO356_21710 RNA polymerase subunit sigma insig. 53 98
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02135 putative RNA polymerase sigma factor FecI cofit 56 93
  Pseudomonas sp. SVBP6 COO64_RS14455 sigma-70 family RNA polymerase sigma factor insig. 53 94
  Pseudomonas segetis P6 ACVTMO_RS11095 sigma-70 family RNA polymerase sigma factor insig. 52 98
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 52 98
  Pseudomonas simiae WCS417 PS417_09655 RNA polymerase sigma factor insig. 56 93
  Variovorax sp. SCN45 GFF5858 heme uptake regulator insig. 56 94
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 53 96
  Pseudomonas sp. RS175 PFR28_00037 putative RNA polymerase sigma factor FecI insig. 54 93
  Pseudomonas fluorescens FW300-N2C3 AO356_07625 RNA polymerase subunit sigma insig. 54 93
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3412 FIG006045: Sigma factor, ECF subfamily insig. 54 93
  Pseudomonas segetis P6 ACVTMO_RS15980 sigma-70 family RNA polymerase sigma factor insig. 49 99
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 51 96
  Pseudomonas fluorescens FW300-N2C3 AO356_26280 RNA polymerase subunit sigma insig. 55 95
  Pseudomonas syringae pv. syringae B728a Psyr_2580 Sigma-70 region 2 no data 52 95
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2580 Sigma-70 region 2 insig. 52 95
  Herbaspirillum seropedicae SmR1 HSERO_RS22395 RNA polymerase sigma factor insig. 52 100
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 49 98
  Klebsiella pneumoniae MKP103 KDGMDA_00205 RNA polymerase sigma factor FecI insig. 51 94
  Pseudomonas fluorescens SBW25 PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 53 97
  Pseudomonas fluorescens SBW25-INTG PFLU_RS13600 sigma-70 family RNA polymerase sigma factor insig. 53 97
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02847 putative RNA polymerase sigma factor FecI no data 53 97
  Escherichia coli ECOR38 HEPCGN_09830 fecI RNA polymerase sigma factor FecI insig. 52 94
  Variovorax sp. SCN45 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 51 96
  Pseudomonas simiae WCS417 PS417_12935 RNA polymerase sigma factor insig. 53 97
  Escherichia coli BL21 ECD_04159 RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor insig. 52 94
  Escherichia coli Nissle 1917 ECOLIN_RS25750 RNA polymerase sigma factor FecI insig. 52 94
  Escherichia coli BW25113 b4293 fecI KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) strong 52 94
  Pseudomonas sp. SVBP6 COO64_RS10835 sigma-70 family RNA polymerase sigma factor insig. 51 97
  Pseudomonas sp. BP01 JOY50_RS24800 sigma-70 family RNA polymerase sigma factor insig. 52 96
  Pseudomonas sp. BP01 JOY50_RS07315 sigma-70 family RNA polymerase sigma factor insig. 51 98
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6050 RNA polymerase sigma-70 factor, ECF subfamily insig. 51 98
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02444 putative RNA polymerase sigma factor FecI cofit 53 94
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4818 RNA polymerase sigma-70 factor, ECF subfamily insig. 54 94
  Pseudomonas sp. DMC3 GFF2735 putative RNA polymerase sigma factor FecI cofit 54 95
  Pseudomonas sp. RS175 PFR28_01871 putative RNA polymerase sigma factor FecI sig. 52 95
  Pseudomonas putida KT2440 PP_3577 RNA polymerase, sigma 19 factor insig. 49 98
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 46 94
  Pseudomonas sp. DMC3 GFF2767 putative RNA polymerase sigma factor FecI insig. 51 93
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.715.1 RNA polymerase sigma factor insig. 52 98
  Pseudomonas sp. SVBP6 COO64_RS19180 sigma-70 family RNA polymerase sigma factor insig. 49 96
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 52 94
  Pseudomonas sp. SVBP6 COO64_RS10870 sigma-70 family RNA polymerase sigma factor insig. 52 95
  Cupriavidus basilensis FW507-4G11 RR42_RS31145 RNA polymerase sigma factor insig. 49 99
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 44 98
o Pectobacterium carotovorum WPP14 HER17_RS17615 sigma-70 family RNA polymerase sigma factor insig. 46 98
  Pectobacterium carotovorum WPP14 HER17_RS21290 sigma-70 family RNA polymerase sigma factor insig. 50 94
o Methylophilus sp. DMC18 GFF1862 putative RNA polymerase sigma factor FecI insig. 48 97
  Pseudomonas sp. SVBP6 COO64_RS15350 sigma-70 family RNA polymerase sigma factor insig. 49 94
  Pseudomonas sp. BP01 JOY50_RS26335 sigma-70 family RNA polymerase sigma factor insig. 49 96
  Pseudomonas orientalis W4I3 QF045_RS02910 sigma-70 family RNA polymerase sigma factor insig. 44 100
  Pseudomonas fluorescens FW300-N2C3 AO356_28820 RNA polymerase subunit sigma insig. 50 94
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1682 RNA polymerase sigma-70 factor, ECF subfamily insig. 50 94
  Pseudomonas putida KT2440 PP_3086 putative RNA polymerase sigma-70 factor insig. 50 94
  Pseudomonas sp. DMC3 GFF570 putative RNA polymerase sigma factor FecI cofit 47 96
o Dickeya dadantii 3937 DDA3937_RS03525 sigma-70 family RNA polymerase sigma factor insig. 48 96
  Pseudomonas sp. BP01 JOY50_RS02515 sigma-70 family RNA polymerase sigma factor insig. 51 90
  Variovorax sp. SCN45 GFF723 RNA polymerase ECF-type sigma factor insig. 54 95
  Pseudomonas fluorescens SBW25 PFLU_RS17395 sigma-70 family RNA polymerase sigma factor insig. 49 94
  Pseudomonas fluorescens SBW25-INTG PFLU_RS17395 sigma-70 family RNA polymerase sigma factor strong 49 94
  Pseudomonas simiae WCS417 PS417_28525 RNA polymerase sigma factor insig. 45 98
  Pseudomonas lactucae CFBP13502 GEMAOFIL_00175 putative RNA polymerase sigma factor FecI cofit 44 100
  Cupriavidus basilensis FW507-4G11 RR42_RS28810 RNA polymerase sigma factor no data 49 94
  Pseudomonas fluorescens SBW25 PFLU_RS30180 sigma-70 family RNA polymerase sigma factor insig. 45 98
  Pseudomonas fluorescens SBW25-INTG PFLU_RS30180 sigma-70 family RNA polymerase sigma factor insig. 45 98
  Pseudomonas sp. BP01 JOY50_RS19840 sigma-70 family RNA polymerase sigma factor no data 49 94
  Pseudomonas aeruginosa PA14 IKLFDK_10030 RNA polymerase subunit sigma insig. 44 96
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 45 99
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 45 99
  Pseudomonas sp. BP01 JOY50_RS04635 sigma-70 family RNA polymerase sigma factor insig. 50 96
  Pseudomonas sp. BP01 JOY50_RS12990 sigma-70 family RNA polymerase sigma factor insig. 44 95