| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. OAS795 | ABID97_RS03390 | | S41 family peptidase | insig. | 100 | 100 |
| o | Variovorax sp. SCN45 | GFF6420 | | carboxyl-terminal protease | insig. | 64 | 90 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_2482 | | Periplasmic protease | insig. | 46 | 94 |
| | Shewanella amazonensis SB2B | Sama_1752 | | hypothetical protein (RefSeq) | insig. | 50 | 79 |
| o | Alteromonas macleodii MIT1002 | MIT1002_01791 | | hypothetical protein | cofit | 44 | 83 |
| | Shewanella loihica PV-4 | Shew_2716 | | peptidase S41 (RefSeq) | insig. | 45 | 74 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3092 | | Peptidase family S41 | insig. | 31 | 79 |
| | Sphingobium sp. HT1-2 | GFF1590 | | Carboxyl-terminal protease | insig. | 28 | 73 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS04360 | | hypothetical protein | strong | 30 | 67 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS07650 | | S41 family peptidase | insig. | 32 | 56 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2518 | | Periplasmic protease | insig. | 28 | 72 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS02560 | | hypothetical protein | strong | 28 | 61 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS09490 | | peptidase S41 | insig. | 27 | 78 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS13885 | | peptidase S41 | insig. | 27 | 78 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2239 | | carboxyl-terminal protease (NCBI ptt file) | sig. | 29 | 53 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2405 | | Periplasmic protease | cofit | 28 | 76 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS14900 | | S41 family peptidase | cofit | 26 | 73 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_00300 | | peptidase, S41 family | cofit | 29 | 52 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS15420 | | peptidase S41 | insig. | 26 | 79 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS11390 | | peptidase S41 | sig. | 26 | 79 |
| | Cellulophaga baltica 18 | M666_RS18060 | | S41 family peptidase | insig. | 26 | 68 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS05295 | | hypothetical protein | insig. | 23 | 72 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_01283 | | peptidase, S41 family | sig. | 25 | 47 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT0154 | | putative periplasmic protease (NCBI ptt file) | sig. | 23 | 60 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_02023 | | peptidase, S41 family | strong | 28 | 43 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_2330 | ctpA | C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A | no data | 26 | 56 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS18825 | | S41 family peptidase | insig. | 26 | 46 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2798 | | carboxy-terminal processing protease precursor (NCBI ptt file) | strong | 27 | 45 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS17415 | | S41 family peptidase | insig. | 27 | 33 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS11545 | | S41 family peptidase | strong | 27 | 43 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0516 | ctpB | C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A | no data | 25 | 81 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS00955 | | S41 family peptidase | sig. | 27 | 44 |
| | Shewanella loihica PV-4 | Shew_3808 | | carboxyl-terminal protease (RefSeq) | insig. | 24 | 50 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1787 | | C-terminal peptidase (prc) | sig. | 25 | 42 |
| | Shewanella sp. ANA-3 | Shewana3_0049 | | C-terminal processing peptidase-3 (RefSeq) | insig. | 24 | 55 |
| | Cellulophaga baltica 18 | M666_RS04850 | | S41 family peptidase | insig. | 25 | 44 |
| | Pseudomonas sp. SVBP6 | COO64_RS13285 | | S41 family peptidase | cofit | 28 | 41 |
| | Shewanella oneidensis MR-1 | SO0047 | | carboxyl-terminal protease, putative (NCBI ptt file) | insig. | 24 | 56 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_18180 | | peptidase S41 | insig. | 24 | 29 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS13410 | | S41 family peptidase | no data | 22 | 77 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS02655 | | S41 family peptidase | strong | 25 | 49 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS05280 | | S41 family peptidase | strong | 22 | 33 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4887 | | Peptidase S41A, C-terminal protease | strong | 27 | 40 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4887 | | Peptidase S41A, C-terminal protease | strong | 27 | 40 |
| | Methylophilus sp. DMC18 | GFF2561 | | hypothetical protein | no data | 26 | 67 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS19120 | | S41 family peptidase | cofit | 22 | 55 |
| | Pseudomonas protegens RBAN4 | FABNJH_01920 | | Carboxy-terminal processing protease | insig. | 27 | 40 |
| | Pseudomonas sp. BP01 | JOY50_RS09410 | | S41 family peptidase | insig. | 26 | 42 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_14690 | | peptidase S41 | sig. | 24 | 44 |
| | Shewanella amazonensis SB2B | Sama_0058 | | C-terminal processing peptidase (RefSeq) | insig. | 23 | 54 |
| | Pseudomonas aeruginosa MRSN321 | PFGADD_05375 | cptA | proteolytic complex protein CptA | strong | 28 | 40 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_27835 | | proteolytic complex protein CptA | strong | 28 | 40 |
| | Pseudomonas aeruginosa PUPa3 | NPBIFN_05452 | cptA | proteolytic complex protein CptA | strong | 28 | 40 |
| | Cellulophaga baltica 18 | M666_RS06035 | | S41 family peptidase | sig. | 23 | 31 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT3035 | | carboxy-terminal processing protease precursor (NCBI ptt file) | strong | 22 | 50 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS11625 | | S41 family peptidase | strong | 22 | 33 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS01460 | | S41 family peptidase | strong | 31 | 13 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS23420 | | peptidase S41 | strong | 28 | 47 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_355 | | Carboxyl-terminal protease (EC 3.4.21.102) | strong | 26 | 39 |
| | Azospirillum sp. SherDot2 | MPMX19_05725 | | hypothetical protein | sig. | 26 | 39 |
| | Pseudomonas putida KT2440 | PP_5058 | | Carboxy-terminal-processing protease | strong | 26 | 42 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1883 | | C-terminal peptidase (prc) | strong | 25 | 48 |
| | Pseudomonas sp. DMC3 | GFF4091 | | Carboxy-terminal processing protease CtpB | cofit | 27 | 40 |