Homologs of BT3037 from Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase ECF-type sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bacteroides thetaiotaomicron VPI-5482 BT3037 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 100 100
o Phocaeicola dorei CL03T12C01 ABI39_RS03220 RNA polymerase sigma-70 factor insig. 66 98
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08940 RNA polymerase sigma-70 factor insig. 65 98
  Bacteroides ovatus ATCC 8483 BACOVA_02727 RNA polymerase sigma-70 factor insig. 32 90
  Bacteroides ovatus ATCC 8483 BACOVA_02845 RNA polymerase sigma-70 factor insig. 28 93
o Bacteroides stercoris CC31F HMPREF1181_RS06910 sigma-70 family RNA polymerase sigma factor insig. 32 86
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02810 RNA polymerase sigma-70 factor insig. 33 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 31 88
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11925 RNA polymerase sigma-70 factor strong 28 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10380 RNA polymerase subunit sigma-70 insig. 33 95
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 28 94
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12920 RNA polymerase sigma-70 factor insig. 30 92
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 29 88
  Bacteroides ovatus ATCC 8483 BACOVA_04866 RNA polymerase sigma-70 factor insig. 30 90
  Phocaeicola dorei CL03T12C01 ABI39_RS03325 RNA polymerase sigma-70 factor insig. 27 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09005 RNA polymerase sigma-70 factor cofit 27 94
  Bacteroides thetaiotaomicron VPI-5482 BT4705 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06645 RNA polymerase sigma-70 factor insig. 28 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 29 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 29 90
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 30 91
  Bacteroides ovatus ATCC 8483 BACOVA_05556 RNA polymerase sigma-70 factor insig. 30 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4205 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 29 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 28 95
  Bacteroides ovatus ATCC 8483 BACOVA_04812 RNA polymerase sigma-70 factor insig. 28 93
  Bacteroides thetaiotaomicron VPI-5482 BT3993 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 29 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14445 sigma-70 family RNA polymerase sigma factor insig. 31 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 29 92
  Shewanella loihica PV-4 Shew_1476 RNA polymerase sigma factor (RefSeq) insig. 26 94
o Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 28 94
  Phocaeicola dorei CL03T12C01 ABI39_RS08655 RNA polymerase sigma-70 factor insig. 30 96
  Phocaeicola dorei CL03T12C01 ABI39_RS02605 RNA polymerase sigma-70 factor insig. 28 93
  Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 27 96
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 27 96
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 27 93
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4566 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 28 93
  Bacteroides thetaiotaomicron VPI-5482 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 89
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1974 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 26 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11460 hypothetical protein insig. 29 88
o Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 30 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13420 RNA polymerase sigma-70 factor insig. 29 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1381 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 94
  Phocaeicola dorei CL03T12C01 ABI39_RS10065 sigma-70 family RNA polymerase sigma factor insig. 30 96
  Bacteroides thetaiotaomicron VPI-5482 BT2198 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 29 95
  Phocaeicola dorei CL03T12C01 ABI39_RS18115 RNA polymerase sigma-70 factor insig. 26 93
  Shewanella sp. ANA-3 Shewana3_2465 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 25 93
  Shewanella oneidensis MR-1 SO1986 RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) insig. 25 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3527 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 30 99
  Bacteroides stercoris CC31F HMPREF1181_RS00820 RNA polymerase sigma-70 factor insig. 28 93
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17460 RNA polymerase sigma-70 factor insig. 27 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00265 RNA polymerase sigma-70 factor insig. 30 90
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 30 98
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor insig. 29 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12140 hypothetical protein insig. 27 90
  Bacteroides thetaiotaomicron VPI-5482 BT1278 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 89
  Phocaeicola dorei CL03T12C01 ABI39_RS10845 RNA polymerase sigma-70 factor insig. 28 91
  Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 29 90
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13360 RNA polymerase sigma-70 factor insig. 28 99
  Bacteroides ovatus ATCC 8483 BACOVA_05151 RNA polymerase sigma-70 factor insig. 28 93
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 28 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15055 RNA polymerase sigma-70 factor sig. 28 92
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 27 91
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 26 93
  Bacteroides ovatus ATCC 8483 BACOVA_04380 Sigma-70 region 2 insig. 25 92
  Bacteroides thetaiotaomicron VPI-5482 BT3748 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 92
  Bacteroides thetaiotaomicron VPI-5482 BT4402 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 27 87
  Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 26 87
  Bacteroides stercoris CC31F HMPREF1181_RS06050 RNA polymerase sigma-70 factor insig. 27 90
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 29 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05780 RNA polymerase sigma-70 factor insig. 28 93
  Bacteroides ovatus ATCC 8483 BACOVA_03594 RNA polymerase sigma-70 factor insig. 26 99
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07365 RNA polymerase sigma factor insig. 26 94
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 32 86
  Bacteroides ovatus ATCC 8483 BACOVA_05174 RNA polymerase sigma-70 factor insig. 26 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04910 RNA polymerase sigma-70 factor insig. 30 91
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 29 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04080 RNA polymerase sigma-70 factor insig. 26 96
  Bacteroides ovatus ATCC 8483 BACOVA_04092 RNA polymerase sigma-70 factor insig. 26 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00770 RNA polymerase sigma-70 factor insig. 30 93
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_09910 hypothetical protein insig. 30 91
  Bacteroides thetaiotaomicron VPI-5482 BT4643 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 92
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3125 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 28 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13700 hypothetical protein insig. 25 94
  Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 29 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05820 RNA polymerase sigma-70 factor insig. 28 91
o Kangiella aquimarina DSM 16071 B158DRAFT_0930 RNA polymerase sigma factor, sigma-70 family insig. 24 93
  Shewanella amazonensis SB2B Sama_2036 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 23 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3485 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 30 88
  Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 30 93
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2852 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 strong 30 89
  Mycobacterium tuberculosis H37Rv Rv0735 Probable alternative RNA polymerase sigma factor SigL insig. 27 91
  Phocaeicola dorei CL03T12C01 ABI39_RS00860 RNA polymerase sigma-70 factor insig. 26 96
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 26 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00590 RNA polymerase sigma-70 factor insig. 26 98
  Bacteroides stercoris CC31F HMPREF1181_RS10020 RNA polymerase sigma-70 factor cofit 25 93
  Bacteroides ovatus ATCC 8483 BACOVA_03554 RNA polymerase sigma-70 factor insig. 24 91
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15190 RNA polymerase sigma-70 factor cofit 23 96
  Bacteroides stercoris CC31F HMPREF1181_RS02840 RNA polymerase sigma factor sig. 29 86
  Bacteroides ovatus ATCC 8483 BACOVA_01682 RNA polymerase sigma-70 factor insig. 25 92
  Bacteroides thetaiotaomicron VPI-5482 BT2463 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 25 93