Conservation of cofitness between Xcc-8004.2214.1 and Xcc-8004.365.1 in Xanthomonas campestris pv. campestris strain 8004

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.2214.1 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 1.0 Xcc-8004.365.1 Transcriptional regulator, LysR family 0.36 19
Variovorax sp. OAS795 0.49 ABID97_RS19050 NAD-dependent succinate-semialdehyde dehydrogenase 0.57 ABID97_RS29425 LysR family transcriptional regulator low > 91
Escherichia coli BW25113 0.46 b1525 b1525 putative aldehyde dehydrogenase (VIMSS) 0.48 b1328 ycjZ predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli BL21 0.46 ECD_01482 succinate semialdehyde dehydrogenase, NAD(P)+-dependent 0.48 ECD_01306 murein peptide degradation regulator — —
Escherichia coli ECRC62 0.46 BNILDI_17240 sad succinate-semialdehyde dehydrogenase 0.48 BNILDI_18115 pgrR DNA-binding transcriptional regulator PgrR low > 75
Escherichia coli ECOR38 0.46 HEPCGN_26650 sad succinate-semialdehyde dehydrogenase 0.59 HEPCGN_07680 lysR LysR family transcriptional regulator low > 88
Escherichia coli ECOR27 0.46 NOLOHH_18760 sad succinate-semialdehyde dehydrogenase 0.48 NOLOHH_19965 pgrR DNA-binding transcriptional regulator PgrR low > 76
Escherichia coli ECRC99 0.46 KEDOAH_27320 sad succinate-semialdehyde dehydrogenase 0.48 KEDOAH_26505 pgrR DNA-binding transcriptional regulator PgrR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02194 Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 0.48 OHPLBJKB_02353 HTH-type transcriptional regulator PgrR low > 74
Escherichia fergusonii Becca 0.45 EFB2_02435 Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 0.59 EFB2_03743 HTH-type transcriptional regulator PgrR 0.31 44
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_00057 succinate semialdehyde dehydrogenase 0.61 H281DRAFT_02686 transcriptional regulator, LysR family low > 103
Escherichia coli ECRC101 0.45 MCAODC_16815 sad succinate-semialdehyde dehydrogenase 0.48 MCAODC_16005 pgrR DNA-binding transcriptional regulator PgrR low > 87
Escherichia coli ECRC102 0.45 NIAGMN_25255 sad succinate-semialdehyde dehydrogenase 0.48 NIAGMN_26435 pgrR DNA-binding transcriptional regulator PgrR low > 80
Escherichia coli ECRC100 0.45 OKFHMN_01110 sad succinate-semialdehyde dehydrogenase 0.48 OKFHMN_02265 pgrR DNA-binding transcriptional regulator PgrR low > 79
Escherichia coli ECRC98 0.45 JDDGAC_03620 sad succinate-semialdehyde dehydrogenase 0.48 JDDGAC_04810 pgrR DNA-binding transcriptional regulator PgrR low > 87
Klebsiella pneumoniae MKP103 0.45 KDGMDA_21585 succinate-semialdehyde dehydrogenase 0.61 KDGMDA_22985 LysR family transcriptional regulator low > 95
Escherichia coli Nissle 1917 0.45 ECOLIN_RS08710 succinate-semialdehyde dehydrogenase 0.59 ECOLIN_RS01950 LysR family transcriptional regulator — —
Paraburkholderia graminis OAS925 0.45 ABIE53_001753 succinate-semialdehyde dehydrogenase 0.61 ABIE53_005583 DNA-binding transcriptional LysR family regulator low > 113
Pantoea agglomerans CFBP13505 P0401 0.45 PagCFBP13505_RS04770 NAD-dependent succinate-semialdehyde dehydrogenase 0.57 PagCFBP13505_RS07675 LysR family transcriptional regulator low > 74
Variovorax sp. SCN45 0.44 GFF713 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) 0.65 GFF907 Transcriptional regulator, LysR family low > 127
Enterobacter sp. TBS_079 0.44 MPMX20_02269 Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 0.55 MPMX20_02525 HTH-type transcriptional regulator PgrR low > 85
Rahnella sp. WP5 0.44 EX31_RS00180 aldehyde dehydrogenase family protein 0.59 EX31_RS20830 LysR family transcriptional regulator low > 89
Klebsiella michiganensis M5al 0.44 BWI76_RS15205 succinate-semialdehyde dehydrogenase 0.54 BWI76_RS18485 LysR family transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.43 EX28DRAFT_1198 NAD-dependent aldehyde dehydrogenases 0.57 EX28DRAFT_1046 Transcriptional regulator low > 76
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_5616 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.60 Pf1N1B4_4966 Transcriptional regulator, LysR family low > 87
Pseudomonas sp. DMC3 0.43 GFF1764 Succinate semialdehyde dehydrogenase [NAD(P)+] Sad 0.61 GFF1673 HTH-type transcriptional regulator PgrR low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_2394 succinate semialdehyde dehydrogenase 0.58 Psyr_3801 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_2394 succinate semialdehyde dehydrogenase 0.58 Psyr_3801 transcriptional regulator, LysR family low > 86
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_1006 NAD-dependent aldehyde dehydrogenases 0.49 Ga0059261_2136 Transcriptional regulator low > 68
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS04460 NAD-dependent succinate-semialdehyde dehydrogenase 0.59 ABZR86_RS17790 LysR family transcriptional regulator low > 74
Sphingobium sp. HT1-2 0.38 GFF4977 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) 0.58 GFF1282 Transcriptional regulator, LysR family low > 95
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS38495 NAD-dependent succinate-semialdehyde dehydrogenase 0.36 QEN71_RS38565 LysR family transcriptional regulator low > 153
Pseudomonas aeruginosa MRSN321 0.30 DY961_RS21260 gabD;go_function=succinate-semialdehyde NADP-dependent succinate-semialdehyde dehydrogenase 0.42 DY961_RS20365 LysR family transcriptional regulator low > 100
Pseudomonas aeruginosa PUPa3 0.30 DQ20_RS38020 gabD;go_function=succinate-semialdehyde NADP-dependent succinate-semialdehyde dehydrogenase 0.42 DQ20_RS54455 LysR family transcriptional regulator low > 101
Pseudomonas aeruginosa PA14 0.30 IKLFDK_24135 NADP-dependent succinate-semialdehyde dehydrogenase 0.42 IKLFDK_08395 LysR family transcriptional regulator low > 98
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS21760 succinate-semialdehyde dehydrogenase 0.58 RR42_RS30480 LysR family transcriptional regulator low > 128
Sinorhizobium meliloti 1021 0.29 SM_b21185 succinate-semialdehyde dehydrogenase (NAD(P)+) protein 0.62 SMa0557 LysR family transcriptional regulator low > 103
Bosea sp. OAE506 0.28 ABIE41_RS20985 NAD-dependent succinate-semialdehyde dehydrogenase 0.59 ABIE41_RS16645 LysR family transcriptional regulator 0.25 67
Pectobacterium carotovorum WPP14 0.28 HER17_RS20100 NAD-dependent succinate-semialdehyde dehydrogenase 0.61 HER17_RS06580 LysR family transcriptional regulator low > 75

Not shown: 27 genomes with orthologs for Xcc-8004.2214.1 only; 16 genomes with orthologs for Xcc-8004.365.1 only