Conservation of cofitness between SMc02558 and SMc00647 in Sinorhizobium meliloti 1021

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc02558 hypothetical protein 1.0 SMc00647 ribosomal large subunit pseudouridine synthase 0.76 2
Rhizobium sp. OAE497 0.57 ABIE40_RS06145 folate-binding protein YgfZ 0.73 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Agrobacterium fabrum C58 0.49 Atu1053 glycine cleavage system T protein, aminomethyltransferase 0.79 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily — —
Bosea sp. OAE506 0.33 ABIE41_RS09695 folate-binding protein YgfZ 0.49 ABIE41_RS05635 RluA family pseudouridine synthase low > 77
Rhodopseudomonas palustris CGA009 0.29 TX73_005490 folate-binding protein YgfZ 0.49 TX73_001905 RluA family pseudouridine synthase low > 86
Dinoroseobacter shibae DFL-12 0.24 Dshi_2092 glycine cleavage T protein (aminomethyl transferase) (RefSeq) 0.36 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS09495 folate-binding protein YgfZ 0.39 A4249_RS10060 RluA family pseudouridine synthase — —
Caulobacter crescentus NA1000 0.22 CCNA_00389 aminomethyltransferase family protein 0.39 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 66
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_00389 aminomethyltransferase family protein 0.39 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Azospirillum sp. SherDot2 0.22 MPMX19_01714 tRNA-modifying protein YgfZ 0.46 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Phaeobacter inhibens DSM 17395 0.22 PGA1_c23960 tRNA-modifying protein ygfZ-like protein 0.41 PGA1_c09000 ribosomal large subunit pseudouridine synthase D — —
Rhodospirillum rubrum S1H 0.17 Rru_A2940 Glycine cleavage T protein (aminomethyl transferase) (NCBI) 0.41 Rru_A1111 Pseudouridine synthase, RluD (NCBI) — —
Kangiella aquimarina DSM 16071 0.14 B158DRAFT_2176 folate-binding protein YgfZ 0.34 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific — —
Escherichia coli ECOR38 0.14 HEPCGN_18840 ygfZ tRNA-modifying protein YgfZ 0.30 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECOR27 0.14 NOLOHH_11475 ygfZ tRNA-modifying protein YgfZ 0.30 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli BL21 0.13 ECD_02730 iron-sulfur cluster repair protein, plumbagin resistance 0.30 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Escherichia fergusonii Becca 0.13 EFB2_01003 tRNA-modifying protein YgfZ 0.30 EFB2_01296 Ribosomal large subunit pseudouridine synthase D — —
Escherichia coli BW25113 0.13 b2898 ygfZ putative global regulator (NCBI) 0.30 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_00817 tRNA-modifying protein YgfZ 0.30 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D — —
Escherichia coli ECRC62 0.13 BNILDI_10005 ygfZ tRNA-modifying protein YgfZ 0.30 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli Nissle 1917 0.13 ECOLIN_RS16145 tRNA-modifying protein YgfZ 0.30 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Shewanella amazonensis SB2B 0.13 Sama_2950 hypothetical protein (RefSeq) 0.31 Sama_2605 pseudouridylate synthase (RefSeq) — —
Escherichia coli ECRC98 0.13 JDDGAC_23190 ygfZ tRNA-modifying protein YgfZ 0.30 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC101 0.13 OKFHMN_19550 ygfZ tRNA-modifying protein YgfZ 0.30 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC102 0.13 NIAGMN_17315 ygfZ tRNA-modifying protein YgfZ 0.30 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC101 0.13 MCAODC_10070 ygfZ tRNA-modifying protein YgfZ 0.30 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC99 0.13 KEDOAH_08590 ygfZ tRNA-modifying protein YgfZ 0.30 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas fluorescens GW456-L13 0.13 PfGW456L13_4521 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress 0.33 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF2996 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress 0.29 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas fluorescens SBW25 0.12 PFLU_RS07175 folate-binding protein YgfZ 0.32 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS07175 folate-binding protein YgfZ 0.32 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Marinobacter adhaerens HP15 0.11 HP15_771 glycine cleavage T-protein (aminomethyl transferase) 0.33 HP15_527 pseudouridine synthase, RluA family low > 73
Pseudomonas fluorescens FW300-N2E2 0.11 Pf6N2E2_2762 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress 0.32 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.11 AO356_04595 aminomethyltransferase 0.32 AO356_15925 ribosomal large subunit pseudouridine synthase D — —
Lysobacter sp. OAE881 0.10 ABIE51_RS12540 folate-binding protein YgfZ 0.31 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Xanthomonas campestris pv. campestris strain 8004 0.10 Xcc-8004.2453.1 Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress 0.32 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —

Not shown: 2 genomes with orthologs for SMc02558 only; 57 genomes with orthologs for SMc00647 only