Conservation of cofitness between RR42_RS16015 and RR42_RS29625 in Cupriavidus basilensis FW507-4G11

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS16015 membrane protein 1.0 RR42_RS29625 LysR family transcriptional regulator 0.37 17
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_00156 Outer membrane protein OmpA 0.56 H281DRAFT_01258 transcriptional regulator, LysR family low > 103
Paraburkholderia graminis OAS925 0.50 ABIE53_001266 outer membrane protein OmpA-like peptidoglycan-associated protein 0.56 ABIE53_006260 DNA-binding transcriptional LysR family regulator low > 113
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS04960 membrane protein 0.57 BPHYT_RS09410 LysR family transcriptional regulator 0.32 75
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS25020 OmpA family protein 0.58 QEN71_RS33285 LysR substrate-binding domain-containing protein low > 153
Pantoea sp. MT58 0.31 IAI47_00140 OmpA family lipoprotein 0.33 IAI47_03855 LysR family transcriptional regulator low > 76
Escherichia coli BL21 0.30 ECD_03402 multicopy suppressor of bamB; outer membrane lipoprotein 0.33 ECD_02687 transcriptional activator of lysA; autorepressor low > 61
Klebsiella michiganensis M5al 0.30 BWI76_RS26935 OmpA family lipoprotein 0.30 BWI76_RS23365 LysR family transcriptional regulator low > 92
Sinorhizobium meliloti 1021 0.30 SMc00354 hypothetical protein 0.19 SMc02030 transcriptional regulator — —
Enterobacter sp. TBS_079 0.29 MPMX20_00182 putative lipoprotein YiaD 0.33 MPMX20_03706 Octopine catabolism/uptake operon regulatory protein OccR low > 85
Pseudomonas putida KT2440 0.29 PP_0773 OmpA/MotB domain-containing protein 0.31 PP_4460 Transcriptional regulator, LysR family low > 96
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF459 Outer membrane protein A precursor 0.31 GFF1324 Transcriptional activator protein LysR low > 78
Enterobacter asburiae PDN3 0.29 EX28DRAFT_3812 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.32 EX28DRAFT_2917 Transcriptional regulator low > 76
Escherichia fergusonii Becca 0.29 EFB2_00255 putative lipoprotein YiaD 0.32 EFB2_01044 Octopine catabolism/uptake operon regulatory protein OccR low > 86
Phaeobacter inhibens DSM 17395 0.29 PGA1_c29000 inner membrane lipoprotein 0.15 PGA1_262p01670 putative transcriptional regulator, LysR family low > 62
Escherichia coli ECRC62 0.29 BNILDI_03575 yiaD OmpA family lipoprotein 0.32 BNILDI_10305 lysR DNA-binding transcriptional regulator LysR low > 75
Escherichia coli ECRC102 0.29 NIAGMN_13785 yiaD OmpA family lipoprotein 0.32 NIAGMN_17710 lysR DNA-binding transcriptional regulator LysR — —
Escherichia coli ECRC101 0.29 MCAODC_06540 yiaD OmpA family lipoprotein 0.32 MCAODC_10465 lysR DNA-binding transcriptional regulator LysR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00154 putative lipoprotein YiaD 0.33 OHPLBJKB_00890 Octopine catabolism/uptake operon regulatory protein OccR low > 73
Escherichia coli ECRC99 0.29 KEDOAH_12125 yiaD OmpA family lipoprotein 0.32 KEDOAH_08190 lysR DNA-binding transcriptional regulator LysR — —
Escherichia coli ECOR27 0.29 NOLOHH_07970 yiaD OmpA family lipoprotein 0.33 NOLOHH_11825 lysR DNA-binding transcriptional regulator LysR low > 75
Escherichia coli Nissle 1917 0.29 ECOLIN_RS20325 OmpA family lipoprotein 0.32 ECOLIN_RS15935 DNA-binding transcriptional regulator LysR low > 55
Escherichia coli ECOR38 0.29 HEPCGN_14915 yiaD OmpA family lipoprotein 0.32 HEPCGN_19570 lysR DNA-binding transcriptional regulator LysR low > 87
Escherichia coli ECRC100 0.29 OKFHMN_16025 yiaD OmpA family lipoprotein 0.32 OKFHMN_19940 lysR DNA-binding transcriptional regulator LysR low > 80
Escherichia coli ECRC98 0.29 JDDGAC_19655 yiaD OmpA family lipoprotein 0.32 JDDGAC_23605 lysR DNA-binding transcriptional regulator LysR low > 86
Escherichia coli BW25113 0.29 b3552 yiaD predicted outer membrane lipoprotien (NCBI) 0.33 b2839 lysR DNA-binding transcriptional dual regulator (NCBI) low > 76
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_1624 Outer membrane protein assembly factor YaeT precursor 0.25 PfGW456L13_3120 LysR-family transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_5327 Outer membrane protein assembly factor YaeT precursor 0.33 Pf6N2E2_1093 Transcriptional regulatory protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_17015 cell envelope biogenesis protein OmpA 0.33 AO356_26100 LysR family transcriptional regulator low > 104
Variovorax sp. SCN45 0.28 GFF5449 Probable lipoprotein YiaD 0.28 GFF2490 Transcriptional regulator, LysR family low > 127
Agrobacterium fabrum C58 0.28 Atu2722 porin 0.25 Atu6029 transcriptional regulator, LysR family for nopaline metabolism low > 89
Rahnella sp. WP5 0.27 EX31_RS05890 OmpA family lipoprotein 0.30 EX31_RS13280 LysR family transcriptional regulator low > 89
Serratia liquefaciens MT49 0.27 IAI46_00110 OmpA family lipoprotein 0.31 IAI46_20525 LysR family transcriptional regulator low > 86
Marinobacter adhaerens HP15 0.26 HP15_2555 OmpA/MotB domain protein 0.19 HP15_2808 protein containing LysR, substrate-binding domain low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF286 Outer membrane lipoprotein omp16 precursor 0.24 GFF2706 Transcriptional regulatory protein — —

Not shown: 39 genomes with orthologs for RR42_RS16015 only; 10 genomes with orthologs for RR42_RS29625 only