Conservation of cofitness between Psyr_5005 and Psyr_3437 in Pseudomonas syringae pv. syringae B728a

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_5005 protein of unknown function DUF945 1.0 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG 0.37 15
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_5005 protein of unknown function DUF945 1.00 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_11370 hypothetical protein 0.96 AO353_18785 flagellar biosynthesis sigma factor low > 101
Pseudomonas sp. S08-1 0.37 OH686_01915 GTP-binding protein 0.83 OH686_02730 RNA polymerase sigma factor for flagellar operon low > 80
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_502 GTP-binding protein 0.95 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas sp. DMC3 0.36 GFF4264 Protein YdgA 0.95 GFF2472 RNA polymerase sigma factor FliA low > 89
Pseudomonas simiae WCS417 0.36 PS417_00735 hypothetical protein 0.94 PS417_19695 flagellar biosynthesis sigma factor low > 88
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1746 GTP-binding protein 0.96 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas fluorescens SBW25 0.35 PFLU_RS00730 YdgA family protein 0.94 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS00730 YdgA family protein 0.94 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_10805 hypothetical protein 0.94 AO356_03730 flagellar biosynthesis sigma factor low > 104
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_00368 Protein YdgA 0.94 GEMAOFIL_04138 RNA polymerase sigma factor FliA low > 96
Pseudomonas sp. SVBP6 0.34 COO64_RS20210 YdgA family protein 0.96 COO64_RS25625 fliA RNA polymerase sigma factor FliA low > 93
Pseudomonas sp. RS175 0.34 PFR28_04737 Protein YdgA 0.94 PFR28_00852 RNA polymerase sigma factor FliA low > 88
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_4033 GTP-binding protein 0.94 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon low > 103
Pseudomonas orientalis W4I3 0.33 QF045_RS03710 YdgA family protein 0.94 QF045_RS21835 RNA polymerase sigma factor FliA low > 93
Pseudomonas putida KT2440 0.29 PP_1230 conserved exported protein of unknown function 0.92 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons low > 96
Pseudomonas sp. BP01 0.28 JOY50_RS01745 YdgA family protein 0.92 JOY50_RS00585 fliA RNA polymerase sigma factor FliA low > 84
Pseudomonas stutzeri RCH2 0.18 Psest_0041 Uncharacterized protein conserved in bacteria 0.81 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family low > 67
Pectobacterium carotovorum WPP14 0.17 HER17_RS10765 YdgA family protein 0.41 HER17_RS08355 RNA polymerase sigma factor FliA low > 75
Pantoea sp. MT58 0.16 IAI47_10345 YdgA family protein 0.42 IAI47_08160 RNA polymerase sigma factor FliA low > 76
Serratia liquefaciens MT49 0.16 IAI46_11640 YdgA family protein 0.41 IAI46_15785 RNA polymerase sigma factor FliA low > 87
Pantoea agglomerans CFBP13505 P0401 0.16 PagCFBP13505_RS05785 DUF945 domain-containing protein 0.42 PagCFBP13505_RS02055 RNA polymerase sigma factor FliA low > 74
Rahnella sp. WP5 0.16 EX31_RS06975 YdgA family protein 0.41 EX31_RS09450 RNA polymerase sigma factor FliA low > 89
Erwinia amylovora T8 0.15 OLJFJH_14305 DUF945 domain-containing protein 0.43 OLJFJH_12555 RNA polymerase sigma factor FliA low > 58
Erwinia tracheiphila SCR3 0.15 LU632_RS12340 YdgA family protein 0.43 LU632_RS13785 RNA polymerase sigma factor FliA low > 73
Erwinia tracheiphila HP pepo 2.2 0.15 IJEDHG_23245 DUF945 domain-containing protein 0.44 IJEDHG_21960 fliA RNA polymerase sigma factor FliA low > 61
Escherichia coli Nissle 1917 0.15 ECOLIN_RS09010 YdgA family protein 0.42 ECOLIN_RS10975 RNA polymerase sigma factor FliA low > 55
Escherichia fergusonii Becca 0.15 EFB2_02378 Protein YdgA 0.42 EFB2_02023 RNA polymerase sigma factor FliA low > 86
Escherichia coli BW25113 0.15 b1614 ydgA hypothetical protein (NCBI) 0.42 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) low > 76
Escherichia coli ECRC99 0.15 KEDOAH_00470 ydgA Protein YdgA 0.42 KEDOAH_02310 fliA RNA polymerase sigma factor FliA — —
Escherichia coli ECRC102 0.15 NIAGMN_00440 ydgA Protein YdgA 0.42 NIAGMN_02270 fliA RNA polymerase sigma factor FliA — —
Escherichia coli ECOR38 0.15 HEPCGN_06010 ydgA Protein YdgA 0.42 HEPCGN_04135 fliA RNA polymerase sigma factor FliA low > 88
Escherichia coli ECRC100 0.15 OKFHMN_27635 ydgA Protein YdgA 0.42 OKFHMN_25780 fliA RNA polymerase sigma factor FliA low > 79
Escherichia coli ECRC98 0.15 JDDGAC_02225 ydgA Protein YdgA 0.42 JDDGAC_00370 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli ECRC101 0.14 MCAODC_17775 ydgA Protein YdgA 0.42 MCAODC_19610 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli ECRC62 0.14 BNILDI_16930 ydgA Protein YdgA 0.42 BNILDI_15190 fliA RNA polymerase sigma factor FliA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.14 OHPLBJKB_02112 Protein YdgA 0.42 OHPLBJKB_01807 RNA polymerase sigma factor FliA low > 74
Escherichia coli ECOR27 0.14 NOLOHH_18140 ydgA Protein YdgA 0.42 NOLOHH_16400 fliA RNA polymerase sigma factor FliA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF1809 Putative GTP-binding protein YdgA 0.41 GFF1690 RNA polymerase sigma factor for flagellar operon low > 78
Enterobacter sp. TBS_079 0.13 MPMX20_02019 Protein YdgA 0.41 MPMX20_02847 RNA polymerase sigma factor FliA low > 85
Enterobacter asburiae PDN3 0.13 EX28DRAFT_1611 Uncharacterized protein conserved in bacteria 0.41 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family low > 76
Castellaniella sp019104865 MT123 0.13 ABCV34_RS00930 YdgA family protein 0.37 ABCV34_RS05605 RNA polymerase sigma factor FliA low > 48
Dickeya dadantii 3937 0.13 DDA3937_RS10645 YdgA family protein 0.43 DDA3937_RS13300 RNA polymerase sigma factor FliA low > 74
Dickeya dianthicola ME23 0.12 DZA65_RS11115 YdgA family protein 0.43 DZA65_RS13835 RNA polymerase sigma factor FliA low > 75
Dickeya dianthicola 67-19 0.12 HGI48_RS10645 YdgA family protein 0.43 HGI48_RS13350 RNA polymerase sigma factor FliA low > 71

Not shown: 3 genomes with orthologs for Psyr_5005 only; 38 genomes with orthologs for Psyr_3437 only