Conservation of cofitness between Psyr_0003 and Psyr_0393 in Pseudomonas syringae pv. syringae B728a

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_0393 Protein of unknown function DUF971 0.33 17
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_0393 Protein of unknown function DUF971 0.46 15
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.85 AO353_12420 predicted FeS cluster maintenance protein (from data) low > 101
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.85 Pf1N1B4_1554 predicted FeS cluster maintenance protein (from data) low > 87
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.79 PFLU_RS01955 DUF971 domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.79 PFLU_RS01955 DUF971 domain-containing protein 0.54 11
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.86 AO356_09465 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase — —
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.82 GFF3084 hypothetical protein low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.79 QF045_RS04970 DUF971 domain-containing protein low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.79 GEMAOFIL_00615 hypothetical protein low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.81 COO64_RS13555 gamma-butyrobetaine hydroxylase-like domain-containing protein low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.87 PFR28_04997 hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.86 Pf6N2E2_3771 FIG028220: hypothetical protein co-occurring with HEAT repeat protein — —
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.84 PfGW456L13_291 FIG028220: hypothetical protein co-occurring with HEAT repeat protein — —
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.80 JOY50_RS09680 gamma-butyrobetaine hydroxylase-like domain-containing protein — —
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.78 PS417_01910 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase — —
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.81 PP_5002 conserved protein of unknown function — —
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.76 MPMX49_04249 hypothetical protein — —
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.76 OH686_10105 hypothetical protein — —
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.79 IKLFDK_28250 ATP-dependent protease ATPase subunit HslU — —
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.73 Psest_3938 Uncharacterized protein conserved in bacteria low > 67
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.50 SO4164 predicted FeS cluster maintenance protein (from data) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.50 Shewana3_3701 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.48 Sama_0429 predicted FeS cluster maintenance protein (from data) low > 62
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.48 Shew_0373 hypothetical protein (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.47 B158DRAFT_0745 Uncharacterized protein conserved in bacteria low > 40
Rhizobium sp. OAE497 0.16 ABIE40_RS00200 DNA replication/repair protein RecF 0.41 ABIE40_RS10580 DUF971 domain-containing protein low > 107
Agrobacterium fabrum C58 0.16 Atu0073 recF-like protein 0.38 Atu1694 hypothetical protein low > 89
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.47 MPMX19_01909 hypothetical protein — —
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.43 AZOBR_RS00130 hypothetical protein low > 97
Xanthobacter sp. DMC5 0.12 GFF3876 DNA replication and repair protein RecF 0.36 GFF2379 hypothetical protein — —

Not shown: 69 genomes with orthologs for Psyr_0003 only; 19 genomes with orthologs for Psyr_0393 only