Conservation of cofitness between PP_3417 and PP_1444 in Pseudomonas putida KT2440

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3417 D-gluconate transporter 1.0 PP_1444 quinoprotein glucose dehydrogenase 0.56 5
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_3338 gluconate permease GntT 0.68 Psyr_3930 quinoprotein glucose dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_3338 gluconate permease GntT 0.68 Psyr_3930 quinoprotein glucose dehydrogenase low > 86
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS23585 GntP family permease 0.65 PFLU_RS05385 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase 0.65 4
Pseudomonas fluorescens SBW25 0.77 PFLU_RS23585 GntP family permease 0.65 PFLU_RS05385 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase 0.72 5
Pseudomonas simiae WCS417 0.77 PS417_21980 permease DsdX 0.66 PS417_05300 glucose dehydrogenase 0.30 3
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2863 Gluconate permease 0.67 Pf6N2E2_5442 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) 0.61 9
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_03245 permease DsdX 0.81 AO353_16045 glucose dehydrogenase 0.42 12
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05055 permease DsdX 0.67 AO356_17600 glucose dehydrogenase 0.25 59
Pseudomonas sp. RS175 0.75 PFR28_00595 High-affinity gluconate transporter 0.67 PFR28_03503 Quinoprotein glucose dehydrogenase 0.17 21
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1927 Gluconate permease 0.82 PfGW456L13_4805 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) 0.38 40
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_556 Gluconate permease 0.66 Pf1N1B4_821 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) 0.56 1
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS26910 GntP family permease 0.42 QEN71_RS39025 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase low > 153
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS13375 permease 0.33 BPHYT_RS08325 glucose dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04276 gluconate permease GntT 0.46 H281DRAFT_03298 quinoprotein glucose dehydrogenase low > 103
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS12640 gluconate:H+ symporter 0.49 ABZR86_RS07420 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family low > 74
Enterobacter sp. TBS_079 0.46 MPMX20_04302 High-affinity gluconate transporter 0.44 MPMX20_00818 Quinoprotein glucose dehydrogenase low > 85
Pantoea sp. MT58 0.45 IAI47_14085 gluconate transporter 0.44 IAI47_17585 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase 0.43 40
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4127 gluconate transporter 0.44 EX28DRAFT_3721 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family low > 76
Serratia liquefaciens MT49 0.44 IAI46_23960 gluconate transporter 0.44 IAI46_16485 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase low > 86
Escherichia coli ECRC62 0.44 BNILDI_02745 gntT gluconate transporter 0.43 BNILDI_08815 gcd quinoprotein glucose dehydrogenase — —
Escherichia coli BW25113 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) 0.43 b0124 gcd glucose dehydrogenase (NCBI) low > 76
Escherichia coli ECOR38 0.44 HEPCGN_15795 gntT gluconate transporter 0.43 HEPCGN_08430 gcd quinoprotein glucose dehydrogenase low > 85
Escherichia coli BL21 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system 0.43 ECD_00123 glucose dehydrogenase low > 60
Escherichia coli ECRC98 0.44 JDDGAC_20615 gntT gluconate transporter 0.43 JDDGAC_14045 gcd quinoprotein glucose dehydrogenase — —
Escherichia fergusonii Becca 0.44 EFB2_00413 High-affinity gluconate transporter 0.43 EFB2_03921 Quinoprotein glucose dehydrogenase low > 86
Escherichia coli ECRC102 0.44 NIAGMN_14755 gntT gluconate transporter 0.43 NIAGMN_08300 gcd quinoprotein glucose dehydrogenase — —
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19505 gluconate transporter 0.43 ECOLIN_RS00690 quinoprotein glucose dehydrogenase low > 52
Escherichia coli ECRC99 0.44 KEDOAH_11155 gntT gluconate transporter 0.43 KEDOAH_17705 gcd quinoprotein glucose dehydrogenase — —
Escherichia coli ECRC101 0.44 MCAODC_07515 gntT gluconate transporter 0.43 MCAODC_00965 gcd quinoprotein glucose dehydrogenase — —
Escherichia coli ECRC101 0.44 OKFHMN_16985 gntT gluconate transporter 0.43 OKFHMN_10450 gcd quinoprotein glucose dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00288 High-affinity gluconate transporter 0.43 OHPLBJKB_03537 Quinoprotein glucose dehydrogenase low > 73
Escherichia coli ECOR27 0.44 NOLOHH_08770 gntT gluconate transporter 0.43 NOLOHH_02795 gcd quinoprotein glucose dehydrogenase low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF602 High-affinity gluconate transporter GntT 0.43 GFF104 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) 0.45 BWI76_RS04950 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family low > 92
Rahnella sp. WP5 0.42 EX31_RS05050 gluconate transporter 0.45 EX31_RS00275 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase low > 89

Not shown: 25 genomes with orthologs for PP_3417 only; 9 genomes with orthologs for PP_1444 only