Conservation of cofitness between PFLU_RS07240 and PFLU_RS11310 in Pseudomonas fluorescens SBW25

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.0 PFLU_RS11310 DNA-binding transcriptional regulator 0.65 5
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.00 PFLU_RS11310 DNA-binding transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.92 PS417_07130 RNA polymerase sigma-H factor AlgU 0.95 PS417_10950 AraC family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_04565 RNA polymerase subunit sigma 0.92 AO356_28495 AraC family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.92 Pf6N2E2_1453 Xylose activator XylR (AraC family) low > 103
Pseudomonas sp. RS175 0.70 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.93 PFR28_02347 Xylose operon regulatory protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.92 Psyr_2882 transcriptional regulator, AraC family low > 86
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.92 Psyr_2882 transcriptional regulator, AraC family low > 86
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS14395 sugar dehydratase 0.67 BPHYT_RS32830 AraC family transcriptional regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_04357 sigma E regulatory protein, MucB/RseB 0.67 H281DRAFT_03875 transcriptional regulator, AraC family low > 103
Paraburkholderia graminis OAS925 0.16 ABIE53_003041 sigma-E factor negative regulatory protein RseB 0.67 ABIE53_004928 LacI family transcriptional regulator low > 113
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.67 QEN71_RS25880 DNA-binding transcriptional regulator low > 153
Pantoea sp. MT58 0.15 IAI47_04860 sigma-E factor regulatory protein RseB 0.46 IAI47_00175 XylR family transcriptional regulator low > 76
Herbaspirillum seropedicae SmR1 0.14 HSERO_RS09635 transcriptional regulator 0.69 HSERO_RS22455 AraC family transcriptional regulator low > 78
Dickeya dianthicola 67-19 0.14 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.45 HGI48_RS00330 XylR family transcriptional regulator 0.52 6
Dickeya dianthicola ME23 0.14 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.45 DZA65_RS00330 DNA-binding transcriptional regulator low > 75
Dickeya dadantii 3937 0.14 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.44 DDA3937_RS20915 DNA-binding transcriptional regulator low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.43 GFF442 Xylose activator XylR (AraC family) low > 78
Klebsiella michiganensis M5al 0.13 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.44 BWI76_RS27045 XylR family transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.13 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.45 MPMX20_00161 Xylose operon regulatory protein low > 85
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.45 EX28DRAFT_3834 Transcriptional regulators low > 76
Rahnella sp. WP5 0.13 EX31_RS21810 sigma-E factor regulatory protein RseB 0.46 EX31_RS09745 XylR family transcriptional regulator low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.45 OHPLBJKB_00135 Xylose operon regulatory protein low > 73
Escherichia coli BL21 0.13 ECD_02465 anti-sigma E factor, binds RseA 0.45 ECD_03421 xylose divergent operon transcriptional activator low > 61
Escherichia coli ECRC98 0.13 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.45 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR low > 86
Escherichia coli BW25113 0.13 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.45 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) low > 76
Escherichia coli ECOR38 0.13 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.45 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR low > 87
Escherichia coli ECRC102 0.13 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.45 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR — —
Escherichia fergusonii Becca 0.13 EFB2_01325 Sigma-E factor regulatory protein RseB 0.44 EFB2_00238 Xylose operon regulatory protein low > 86
Escherichia coli ECRC99 0.13 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.45 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli ECRC100 0.13 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.45 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR low > 80
Escherichia coli ECRC62 0.13 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.45 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR low > 75
Escherichia coli ECRC101 0.13 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.45 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR low > 87
Escherichia coli Nissle 1917 0.13 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.45 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR low > 55
Escherichia coli ECOR27 0.13 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.45 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR low > 75
Pectobacterium carotovorum WPP14 0.13 HER17_RS05790 sigma-E factor regulatory protein RseB 0.43 HER17_RS21065 XylR family transcriptional regulator low > 75
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS10175 MucB/RseB C-terminal domain-containing protein 0.68 ABZR87_RS18215 DNA-binding transcriptional regulator low > 80
Serratia liquefaciens MT49 0.12 IAI46_19575 sigma-E factor regulatory protein RseB 0.44 IAI46_00300 DNA-binding transcriptional regulator low > 86

Not shown: 23 genomes with orthologs for PFLU_RS07240 only; 4 genomes with orthologs for PFLU_RS11310 only