Conservation of cofitness between JDDGAC_25030 and JDDGAC_10870 in Escherichia coli ECRC98

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_25030 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.0 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.64 19
Escherichia coli ECRC99 1.00 KEDOAH_06855 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC102 1.00 NIAGMN_19135 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC100 1.00 OKFHMN_21365 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Escherichia coli ECRC101 1.00 MCAODC_11895 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.56 29
Escherichia coli ECOR27 0.97 NOLOHH_13040 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli ECRC62 0.96 BNILDI_11840 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli BW25113 0.96 b2575 yfiC putative enzyme (VIMSS) 1.00 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.96 OHPLBJKB_01132 tRNA1(Val) (adenine(37)-N6)-methyltransferase 1.00 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 73
Escherichia coli BL21 0.96 ECD_02469 tRNA1(Val) (adenine(37)-N6)-methyltransferase 1.00 ECD_00629 tRNA-i(6)A37 methylthiotransferase low > 61
Escherichia coli Nissle 1917 0.95 ECOLIN_RS14575 tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia fergusonii Becca 0.95 EFB2_01321 tRNA1(Val) (adenine(37)-N6)-methyltransferase 1.00 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 86
Escherichia coli ECOR38 0.95 HEPCGN_20510 trmN tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN 1.00 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF2105 tRNA (adenine37-N(6))-methyltransferase TrmN6 (EC 2.1.1.223) 0.99 GFF4579 tRNA-i(6)A37 methylthiotransferase low > 78
Enterobacter asburiae PDN3 0.77 EX28DRAFT_0070 Predicted O-methyltransferase 0.91 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 76
Enterobacter sp. TBS_079 0.77 MPMX20_03446 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.91 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 85
Klebsiella michiganensis M5al 0.73 BWI76_RS21365 tRNA (adenosine(37)-N6)-methyltransferase TrmM 0.97 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Erwinia tracheiphila SCR3 0.68 LU632_RS15435 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.88 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Pantoea sp. MT58 0.65 IAI47_04840 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.87 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Pectobacterium carotovorum WPP14 0.54 HER17_RS05770 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.89 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS15860 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.88 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 71
Dickeya dianthicola ME23 0.52 DZA65_RS16940 methyltransferase 0.88 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Dickeya dadantii 3937 0.52 DDA3937_RS15775 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.88 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Serratia liquefaciens MT49 0.52 IAI46_19595 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.86 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Rahnella sp. WP5 0.49 EX31_RS21790 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.84 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 89
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS14335 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.34 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 56
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS01205 methyltransferase 0.32 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 67
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02572 methyltransferase domain protein 0.33 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 94
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS16525 methyltransferase 0.32 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 72
Bacteroides thetaiotaomicron VPI-5482 0.38 BT0838 putative RNA methyltransferase (NCBI ptt file) 0.34 BT3195 conserved hypothetical protein (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS16180 methyltransferase 0.32 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 61
Shewanella loihica PV-4 0.34 Shew_0768 methyltransferase small (RefSeq) 0.75 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 60
Shewanella sp. ANA-3 0.31 Shewana3_3333 methyltransferase small (RefSeq) 0.77 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 73
Shewanella amazonensis SB2B 0.31 Sama_2741 hypothetical protein (RefSeq) 0.77 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_03480 tRNA (adenosine(37)-N6)-methyltransferase TrmM 0.77 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Shewanella oneidensis MR-1 0.30 SO0948 conserved hypothetical protein (NCBI ptt file) 0.77 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) low > 76
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_00825 methyltransferase 0.32 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS09765 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.29 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1814 Predicted O-methyltransferase 0.31 Echvi_2376 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.22 CA265_RS05210 tRNA methyltransferase 0.29 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 88
Alteromonas macleodii MIT1002 0.19 MIT1002_03442 tRNA1(Val) (adenine(37)-N6)-methyltransferase 0.78 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 70

Not shown: 0 genomes with orthologs for JDDGAC_25030 only; 61 genomes with orthologs for JDDGAC_10870 only