| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 1.0 | IAI46_11130 | | FAD-binding oxidoreductase | 0.61 | 19 |
| Rahnella sp. WP5 | 0.92 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.86 | EX31_RS13925 | | FAD-binding oxidoreductase | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.84 | HER17_RS08905 | | FAD-binding oxidoreductase | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | DDA3937_RS12795 | | FAD-binding oxidoreductase | low | > 74 |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | DZA65_RS13325 | | FAD-binding oxidoreductase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | HGI48_RS12860 | | FAD-binding oxidoreductase | low | > 71 |
| Pantoea sp. MT58 | 0.89 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | IAI47_10890 | | FAD-binding oxidoreductase | low | > 76 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | OKFHMN_27230 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | HEPCGN_05615 | ydiJ | Uncharacterized protein YdiJ | low | > 85 |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | NIAGMN_00835 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.83 | OHPLBJKB_02037 | | hypothetical protein | low | > 73 |
| Escherichia fergusonii Becca | 0.88 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.82 | EFB2_02305 | | hypothetical protein | low | > 86 |
| Escherichia coli ECRC101 | 0.88 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | MCAODC_18180 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | KEDOAH_00880 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Escherichia coli BL21 | 0.88 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.83 | ECD_01656 | | putative FAD-linked oxidoreductase | low | > 60 |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | JDDGAC_01805 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Escherichia coli BW25113 | 0.88 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.82 | b1687 | ydiJ | predicted FAD-linked oxidoreductase (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | ECOLIN_RS09430 | | FAD-binding and (Fe-S)-binding domain-containing protein | low | > 52 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.84 | MPMX20_01926 | | hypothetical protein | low | > 85 |
| Escherichia coli ECRC62 | 0.87 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | BNILDI_16540 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | NOLOHH_17750 | ydiJ | Uncharacterized protein YdiJ | — | — |
| Enterobacter asburiae PDN3 | 0.87 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.83 | EX28DRAFT_1696 | | FAD/FMN-containing dehydrogenases | low | > 76 |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.82 | BWI76_RS17050 | | FAD-binding oxidoreductase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.87 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.81 | GFF3554 | | Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | LU632_RS11040 | | FAD-binding oxidoreductase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.65 | CSW01_06060 | | FAD-binding oxidoreductase | low | > 62 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.58 | Shewana3_1737 | | FAD linked oxidase domain-containing protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.64 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.57 | Shew_1550 | | FAD linked oxidase domain-containing protein (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.62 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.57 | Sama_2071 | | oxidoreductase, FAD-binding, putative (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.48 | AO356_29050 | | hypothetical protein | low | > 104 |
| Pseudomonas putida KT2440 | 0.55 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.48 | PP_4493 | | D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) | — | — |
| Pseudomonas sp. RS175 | 0.55 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.46 | PFR28_01530 | | hypothetical protein | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.47 | Psyr_2533 | | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal | 0.52 | 48 |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.47 | Psyr_2533 | | FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.45 | Pf1N1B4_4229 | | Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD | — | — |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.32 | Rru_A2060 | | FAD linked oxidase (NCBI) | low | > 58 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.43 | ABIE40_RS21040 | | FAD-binding and (Fe-S)-binding domain-containing protein | low | > 107 |
| Variovorax sp. SCN45 | 0.31 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.16 | GFF1371 | | Fe-S protein, homolog of lactate dehydrogenase SO1521 | low | > 127 |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.16 | ABID97_RS15850 | | FAD-linked oxidase C-terminal domain-containing protein | low | > 91 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.29 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.20 | Echvi_3865 | | FAD/FMN-containing dehydrogenases | low | > 79 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.28 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.07 | ABZR88_RS15005 | | FAD-binding and (Fe-S)-binding domain-containing protein | low | > 71 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.15 | Dshi_3324 | | FAD linked oxidase domain protein (RefSeq) | low | > 64 |
Not shown: 52 genomes with orthologs for IAI46_03985 only; 6 genomes with orthologs for IAI46_11130 only