Conservation of cofitness between HSERO_RS09800 and HSERO_RS23825 in Herbaspirillum seropedicae SmR1

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09800 hypothetical protein 1.0 HSERO_RS23825 hypothetical protein 0.37 4
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS05215 YbdD/YjiX family protein 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Ralstonia solanacearum GMI1000 0.64 RS_RS00115 DUF466 domain-containing protein 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Dickeya dadantii 3937 0.63 DDA3937_RS16355 YbdD/YjiX family protein 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Pseudomonas putida KT2440 0.61 PP_4640 conserved protein of unknown function 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Ralstonia solanacearum UW163 0.61 UW163_RS04065 DUF466 domain-containing protein 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS09515 DUF466 domain-containing protein 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Ralstonia solanacearum PSI07 0.61 RPSI07_RS23835 DUF466 domain-containing protein 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 81
Escherichia coli Nissle 1917 0.61 ECOLIN_RS03285 YbdD/YjiX family protein 0.20 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia fergusonii Becca 0.61 EFB2_03493 hypothetical protein 0.20 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 86
Escherichia coli ECOR38 0.61 HEPCGN_00735 ybdD Uncharacterized protein YbdD 0.20 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli ECRC102 0.61 NIAGMN_05600 ybdD Uncharacterized protein YbdD 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECRC99 0.61 KEDOAH_20425 ybdD Uncharacterized protein YbdD 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Pseudomonas sp. S08-1 0.61 OH686_16215 Uncharacterized YbdD and YjiX 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 80
Escherichia coli ECRC100 0.61 OKFHMN_07545 ybdD Uncharacterized protein YbdD 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Escherichia coli ECRC62 0.61 BNILDI_21930 ybdD Uncharacterized protein YbdD 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli BL21 0.61 ECD_00566 DUF466 family protein 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme low > 61
Escherichia coli ECOR27 0.61 NOLOHH_23920 ybdD Uncharacterized protein YbdD 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli ECRC98 0.61 JDDGAC_11190 ybdD Uncharacterized protein YbdD 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Escherichia coli ECRC101 0.61 MCAODC_26760 ybdD Uncharacterized protein YbdD 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli BW25113 0.61 b4512 ybdD hypothetical protein (NCBI) 0.20 b2324 b2324 putative peptidase (VIMSS) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03107 hypothetical protein 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 73
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1445 COG2879, Hypothetical small protein yjiX 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 87
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2772 COG2879, Hypothetical small protein yjiX 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 87
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_13995 hypothetical protein 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 101
Klebsiella michiganensis M5al 0.59 BWI76_RS03815 hypothetical protein 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 92
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_5079 COG2879, Hypothetical small protein yjiX 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4506 COG2879, Hypothetical small protein yjiX 0.20 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 78
Dickeya dianthicola ME23 0.59 DZA65_RS17540 YbdD/YjiX family protein 0.16 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Dickeya dianthicola 67-19 0.59 HGI48_RS16455 YbdD/YjiX family protein 0.16 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 71
Rahnella sp. WP5 0.59 EX31_RS00790 YbdD/YjiX family protein 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 89
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_15695 hypothetical protein 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase — —
Pectobacterium carotovorum WPP14 0.59 HER17_RS15650 YbdD/YjiX family protein 0.18 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 9
Enterobacter asburiae PDN3 0.58 EX28DRAFT_3535 Uncharacterized small protein 0.18 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_4272 Protein of unknown function DUF466 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Pseudomonas sp. RS175 0.58 PFR28_03789 hypothetical protein 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC — —
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_4272 Protein of unknown function DUF466 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Erwinia tracheiphila SCR3 0.57 LU632_RS20445 YbdD/YjiX family protein 0.14 LU632_RS07800 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Pseudomonas simiae WCS417 0.57 PS417_24290 hypothetical protein 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 88
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS20510 small component of pyruvate transporter (ybdD-like) (from data) 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Pseudomonas fluorescens SBW25 0.56 PFLU_RS26205 YbdD/YjiX family protein 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Serratia liquefaciens MT49 0.56 IAI46_02545 YbdD/YjiX family protein 0.18 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS26205 YbdD/YjiX family protein 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Variovorax sp. SCN45 0.55 GFF1738 Uncharacterized proteins YbdD and YjiX 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 127
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS32875 YbdD/YjiX family protein 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 153
Variovorax sp. OAS795 0.54 ABID97_RS22450 YbdD/YjiX family protein 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 91

Not shown: 6 genomes with orthologs for HSERO_RS09800 only; 19 genomes with orthologs for HSERO_RS23825 only