Conservation of cofitness between HSERO_RS08070 and HSERO_RS23060 in Herbaspirillum seropedicae SmR1

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08070 endonuclease IV 1.0 HSERO_RS23060 hemolysin D 0.34 11
Pseudomonas stutzeri RCH2 0.74 Psest_3118 endonuclease III 0.43 Psest_0309 RND family efflux transporter, MFP subunit 0.36 10
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.44 H281DRAFT_01000 membrane fusion protein, multidrug efflux system low > 103
Pseudomonas sp. S08-1 0.73 OH686_03910 endonuclease III 0.45 OH686_16045 Multidrug efflux system, membrane fusion component low > 80
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.51 Pf6N2E2_221 RND efflux system, membrane fusion protein CmeA low > 103
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_04085 endonuclease III 0.41 AO353_17300 antibiotic transporter low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.47 Psyr_2866 Secretion protein HlyD low > 86
Escherichia coli ECOR38 0.72 HEPCGN_05910 nth endonuclease III 0.45 HEPCGN_25700 acrA efflux transporter periplasmic adaptor subunit low > 87
Escherichia coli Nissle 1917 0.72 ECOLIN_RS09110 endonuclease III 0.44 ECOLIN_RS07785 efflux RND transporter periplasmic adaptor subunit — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.47 Psyr_2866 Secretion protein HlyD low > 86
Escherichia fergusonii Becca 0.71 EFB2_02359 Endonuclease III 0.44 EFB2_02634 Multidrug resistance protein MexA low > 86
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_18345 endonuclease III 0.50 AO356_00700 hemolysin D low > 104
Escherichia coli ECRC100 0.71 OKFHMN_27525 nth endonuclease III 0.43 OKFHMN_02500 acrA efflux transporter periplasmic adaptor subunit low > 80
Escherichia coli ECRC101 0.71 MCAODC_17885 nth endonuclease III 0.43 MCAODC_15770 acrA efflux transporter periplasmic adaptor subunit low > 87
Escherichia coli ECRC102 0.71 NIAGMN_00540 nth endonuclease III 0.43 NIAGMN_26670 acrA efflux transporter periplasmic adaptor subunit — —
Escherichia coli ECRC98 0.71 JDDGAC_02115 nth endonuclease III 0.43 JDDGAC_05045 acrA efflux transporter periplasmic adaptor subunit low > 86
Pseudomonas simiae WCS417 0.71 PS417_05655 endonuclease III 0.49 PS417_18290 hemolysin D low > 88
Pseudomonas fluorescens SBW25 0.71 PFLU_RS05740 endonuclease III 0.48 PFLU_RS20140 efflux RND transporter periplasmic adaptor subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS05740 endonuclease III 0.48 PFLU_RS20140 efflux RND transporter periplasmic adaptor subunit low > 109
Shewanella loihica PV-4 0.69 Shew_2072 endonuclease III (RefSeq) 0.42 Shew_0031 RND family efflux transporter MFP subunit (RefSeq) low > 60
Variovorax sp. SCN45 0.68 GFF418 Endonuclease III (EC 4.2.99.18) 0.48 GFF5989 RND efflux system, membrane fusion protein low > 127
Shewanella amazonensis SB2B 0.68 Sama_1836 endonuclease III (RefSeq) 0.41 Sama_3553 multidrug resistance protein AcrA/AcrE family (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO2514 nth endonuclease III (NCBI ptt file) 0.41 SO4693 multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.40 GFF5686 RND efflux system, membrane fusion protein CmeA low > 90
Shewanella sp. ANA-3 0.67 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.42 Shewana3_4046 RND family efflux transporter MFP subunit (RefSeq) low > 73
Bosea sp. OAE506 0.57 ABIE41_RS03410 endonuclease III 0.43 ABIE41_RS01600 efflux RND transporter periplasmic adaptor subunit low > 77
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_03847 endonuclease III 0.43 CCNA_00851 periplasmic multidrug efflux lipoprotein precursor low > 67
Caulobacter crescentus NA1000 0.51 CCNA_03847 endonuclease III 0.43 CCNA_00851 periplasmic multidrug efflux lipoprotein precursor low > 66

Not shown: 67 genomes with orthologs for HSERO_RS08070 only; 3 genomes with orthologs for HSERO_RS23060 only