Conservation of cofitness between HSERO_RS11505 and HSERO_RS19285 in Herbaspirillum seropedicae SmR1

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS11505 D-ribose pyranase 1.0 HSERO_RS19285 long-chain fatty acid--CoA ligase 0.40 1
Pseudomonas simiae WCS417 0.62 PS417_18380 ribose pyranase 0.50 PS417_15170 long-chain fatty acid--CoA ligase — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS20355 D-ribose pyranase 0.50 PFLU_RS17185 AMP-binding protein — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_2156 RbsD or FucU transport 0.49 Psyr_3834 AMP-dependent synthetase and ligase — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS20355 D-ribose pyranase 0.50 PFLU_RS17185 AMP-binding protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_2156 RbsD or FucU transport 0.49 Psyr_3834 AMP-dependent synthetase and ligase — —
Pseudomonas putida KT2440 0.60 PP_2459 ribose pyranase 0.50 PP_4549 long-chain-fatty-acid/CoA ligase low > 96
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_166 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) 0.50 Pf6N2E2_2873 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_00945 ribose pyranase 0.50 AO356_05105 long-chain fatty acid--CoA ligase — —
Pseudomonas sp. RS175 0.58 PFR28_02732 D-ribose pyranase 0.50 PFR28_00584 Long-chain-fatty-acid--CoA ligase low > 88
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_6030 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) 0.43 Pf1N1B4_575 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 87
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_20840 ribose pyranase 0.50 AO353_03315 long-chain fatty acid--CoA ligase low > 101
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_3907 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) 0.50 PfGW456L13_1910 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Rahnella sp. WP5 0.56 EX31_RS06170 D-ribose pyranase 0.58 EX31_RS10600 long-chain-fatty-acid--CoA ligase FadD low > 89
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_14645 D-ribose pyranase 0.54 CSW01_09905 long-chain-fatty-acid--CoA ligase FadD low > 62
Variovorax sp. OAS795 0.53 ABID97_RS24780 D-ribose pyranase 0.64 ABID97_RS04445 long-chain-fatty-acid--CoA ligase — —
Variovorax sp. SCN45 0.53 GFF2135 D-ribose pyranase (EC 5.4.99.62) 0.63 GFF7283 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Serratia liquefaciens MT49 0.52 IAI46_25075 D-ribose pyranase 0.59 IAI46_14535 long-chain-fatty-acid--CoA ligase FadD low > 86
Pectobacterium carotovorum WPP14 0.52 HER17_RS21550 D-ribose pyranase 0.54 HER17_RS11275 long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_04305 D-ribose pyranase 0.57 OHPLBJKB_01928 Long-chain-fatty-acid--CoA ligase low > 73
Escherichia coli ECOR38 0.51 HEPCGN_13460 rbsD D-ribose pyranase 0.57 HEPCGN_04985 fadD long-chain-fatty-acid--CoA ligase FadD low > 87
Klebsiella michiganensis M5al 0.51 BWI76_RS00270 D-ribose pyranase (EC 5.4.99.62) (from data) 0.57 BWI76_RS17800 long-chain-fatty-acid--CoA ligase low > 92
Escherichia coli ECOR27 0.51 NOLOHH_06885 rbsD D-ribose pyranase 0.57 NOLOHH_17115 fadD long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli ECRC62 0.51 BNILDI_04640 rbsD D-ribose pyranase 0.57 BNILDI_15900 fadD long-chain-fatty-acid--CoA ligase FadD low > 75
Escherichia coli Nissle 1917 0.51 ECOLIN_RS21550 D-ribose pyranase 0.57 ECOLIN_RS10040 long-chain-fatty-acid--CoA ligase FadD low > 55
Pantoea sp. MT58 0.51 IAI47_00350 D-ribose pyranase 0.56 IAI47_08835 long-chain-fatty-acid--CoA ligase FadD low > 76
Escherichia fergusonii Becca 0.51 EFB2_04885 D-ribose pyranase 0.57 EFB2_02195 Long-chain-fatty-acid--CoA ligase low > 86
Escherichia coli ECRC99 0.51 KEDOAH_13400 rbsD D-ribose pyranase 0.57 KEDOAH_01515 fadD long-chain-fatty-acid--CoA ligase FadD — —
Escherichia coli ECRC101 0.51 MCAODC_05255 rbsD D-ribose pyranase 0.57 MCAODC_18815 fadD long-chain-fatty-acid--CoA ligase FadD low > 87
Escherichia coli ECRC102 0.51 NIAGMN_12505 rbsD D-ribose pyranase 0.57 NIAGMN_01470 fadD long-chain-fatty-acid--CoA ligase FadD — —
Escherichia coli ECRC100 0.51 OKFHMN_14750 rbsD D-ribose pyranase 0.57 OKFHMN_26595 fadD long-chain-fatty-acid--CoA ligase FadD low > 80
Escherichia coli BW25113 0.51 b3748 rbsD D-ribose pyranase [EC:5.4.99.62] (from data) 0.57 b1805 fadD acyl-CoA synthase (NCBI) low > 76
Escherichia coli ECRC98 0.51 JDDGAC_18370 rbsD D-ribose pyranase 0.57 JDDGAC_01170 fadD long-chain-fatty-acid--CoA ligase FadD low > 86
Enterobacter asburiae PDN3 0.50 EX28DRAFT_4024 ABC-type ribose transport system, auxiliary component 0.57 EX28DRAFT_0753 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_04619 D-ribose pyranase 0.57 MPMX20_02711 Long-chain-fatty-acid--CoA ligase low > 85
Dickeya dianthicola ME23 0.49 DZA65_RS22315 D-ribose pyranase 0.55 DZA65_RS11605 long-chain-fatty-acid--CoA ligase FadD low > 75
Dickeya dianthicola 67-19 0.49 HGI48_RS21335 D-ribose pyranase 0.55 HGI48_RS11260 long-chain-fatty-acid--CoA ligase FadD low > 71
Acidovorax sp. GW101-3H11 0.48 Ac3H11_1838 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) 0.63 Ac3H11_663 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF1709 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) 0.56 GFF2820 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) low > 78
Azospirillum sp. SherDot2 0.47 MPMX19_03757 D-ribose pyranase 0.34 MPMX19_02151 Long-chain-fatty-acid--CoA ligase low > 112

Not shown: 2 genomes with orthologs for HSERO_RS11505 only; 51 genomes with orthologs for HSERO_RS19285 only