| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS16870 | | D-alanyl-D-alanine carboxypeptidase | 1.0 | HSERO_RS16765 | | LysR family transcriptional regulator | 0.25 | 13 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_670 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.70 | Ac3H11_902 | | Glycine cleavage system transcriptional activator | — | — |
| Variovorax sp. SCN45 | 0.37 | GFF5516 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.30 | GFF1355 | | Transcriptional regulator, LysR family | low | > 127 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.36 | H281DRAFT_04181 | | D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | 0.66 | H281DRAFT_03788 | | transcriptional regulator, LysR family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.36 | ABIE53_003419 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) | 0.66 | ABIE53_004463 | | LysR family transcriptional regulator of beta-lactamase | low | > 113 |
| Pseudomonas putida KT2440 | 0.35 | PP_2098 | | D-alanyl-D-alanine carboxypeptidase | 0.33 | PP_0661 | | putative Transcriptional regulator AmpR | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.61 | PFLU_RS16910 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS22535 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.61 | PFLU_RS16910 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_1950 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.30 | Psest_2739 | | Transcriptional regulator | low | > 67 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_20920 | | D-alanyl-D-alanine carboxypeptidase | 0.61 | PS417_14890 | | LysR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_02595 | | D-alanyl-D-alanine carboxypeptidase | 0.33 | AO356_15125 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2344 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.34 | Pf6N2E2_1560 | | Glycine cleavage system transcriptional activator GcvA | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.33 | Pf1N1B4_3846 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.64 | Pf1N1B4_72 | | Transcriptional regulator, LysR family | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2768 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.67 | GFF1943 | | Glycine cleavage system transcriptional activator | — | — |
| Pectobacterium carotovorum WPP14 | 0.15 | HER17_RS18335 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.34 | HER17_RS16415 | | transcriptional regulator GcvA | low | > 75 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS03175 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.33 | DZA65_RS05390 | | transcriptional regulator GcvA | low | > 75 |
| Enterobacter asburiae PDN3 | 0.14 | EX28DRAFT_3234 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.53 | EX28DRAFT_3351 | | Transcriptional regulator | low | > 76 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS03180 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.33 | HGI48_RS05050 | | transcriptional regulator GcvA | low | > 71 |
| Enterobacter sp. TBS_079 | 0.14 | MPMX20_04086 | | D-alanyl-D-alanine carboxypeptidase DacB | 0.53 | MPMX20_00433 | | HTH-type transcriptional activator AmpR | low | > 85 |
| Serratia liquefaciens MT49 | 0.13 | IAI46_01875 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.59 | IAI46_11610 | | LysR family transcriptional regulator | low | > 86 |
| Rhodospirillum rubrum S1H | 0.11 | Rru_A0132 | | Peptidase S13, D-Ala-D-Ala carboxypeptidase C (NCBI) | 0.32 | Rru_A2214 | | Transcriptional Regulator, LysR family (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.10 | AZOBR_RS18340 | | D-alanyl-D-alanine carboxypeptidase | 0.62 | AZOBR_RS23560 | | LysR family transcriptional regulator | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.09 | Dshi_2208 | | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) | 0.27 | Dshi_3068 | | transcriptional regulator, LysR family (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.08 | Ga0059261_1299 | | D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family | 0.63 | Ga0059261_3144 | | Transcriptional regulator | low | > 68 |
Not shown: 46 genomes with orthologs for HSERO_RS16870 only; 15 genomes with orthologs for HSERO_RS16765 only