Conservation of cofitness between HSERO_RS16875 and HSERO_RS07145 in Herbaspirillum seropedicae SmR1

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16875 diguanylate cyclase 1.0 HSERO_RS07145 hypothetical protein 0.26 17
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS14650 diguanylate cyclase 0.21 QEN71_RS26545 AsmA-like C-terminal region-containing protein — —
Pseudomonas sp. S08-1 0.43 OH686_04700 hypothetical protein 0.07 OH686_08590 Possible exported protein — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS21525 hypothetical protein 0.19 RR42_RS05885 hypothetical protein low > 128
Pseudomonas putida KT2440 0.40 PP_1155 YaiC/YhcK/ArdA family protein 0.07 PP_0938 conserved protein of unknown function low > 96
Serratia liquefaciens MT49 0.40 IAI46_05890 diguanylate cyclase 0.08 IAI46_22695 AsmA2 domain-containing protein YhdP low > 86
Dickeya dadantii 3937 0.36 DDA3937_RS06830 diguanylate cyclase 0.07 DDA3937_RS01455 AsmA2 domain-containing protein YhdP low > 74
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_21315 histidine kinase 0.06 AO353_05225 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_01080 histidine kinase 0.06 AO356_07105 hypothetical protein low > 104
Pseudomonas stutzeri RCH2 0.34 Psest_1455 diguanylate cyclase (GGDEF) domain 0.06 Psest_3322 TIGR02099 family protein low > 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4282 Protein YaiC 0.07 GFF2139 FIG005080: Possible exported protein low > 78
Pectobacterium carotovorum WPP14 0.33 HER17_RS14460 diguanylate cyclase AdrA 0.06 HER17_RS20145 AsmA2 domain-containing protein YhdP low > 75
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_139 Two-component response regulator 0.06 Pf6N2E2_3282 FIG005080: Possible exported protein low > 103
Escherichia coli BW25113 0.31 b0385 yaiC predicted diguanylate cyclase (NCBI) 0.07 b4472 yhdP conserved membrane protein, predicted transporter (NCBI) low > 76
Escherichia coli ECRC98 0.31 JDDGAC_12270 adrA diguanylate cyclase AdrA 0.07 JDDGAC_21375 yhdP AsmA2 domain-containing protein YhdP low > 86
Escherichia coli ECRC100 0.31 OKFHMN_08615 adrA diguanylate cyclase AdrA 0.07 OKFHMN_17750 yhdP AsmA2 domain-containing protein YhdP low > 80
Escherichia coli ECRC99 0.31 KEDOAH_19350 adrA diguanylate cyclase AdrA 0.07 KEDOAH_10400 yhdP AsmA2 domain-containing protein YhdP — —
Escherichia coli ECOR27 0.31 NOLOHH_01540 adrA diguanylate cyclase AdrA 0.07 NOLOHH_09535 yhdP AsmA2 domain-containing protein YhdP low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_03289 putative diguanylate cyclase DgcC 0.07 OHPLBJKB_00459 hypothetical protein low > 73
Escherichia fergusonii Becca 0.31 EFB2_03671 putative diguanylate cyclase DgcC 0.07 EFB2_00585 hypothetical protein low > 86
Escherichia coli ECRC101 0.31 MCAODC_27840 adrA diguanylate cyclase AdrA 0.07 MCAODC_08270 yhdP AsmA2 domain-containing protein YhdP low > 87
Escherichia coli ECRC102 0.31 NIAGMN_06670 adrA diguanylate cyclase AdrA 0.07 NIAGMN_15510 yhdP AsmA2 domain-containing protein YhdP — —
Escherichia coli ECOR38 0.31 HEPCGN_07255 adrA diguanylate cyclase AdrA 0.07 HEPCGN_16615 yhdP AsmA2 domain-containing protein YhdP low > 87
Escherichia coli BL21 0.31 ECD_00332 diguanylate cyclase, cellulose regualtor 0.07 ECD_03105 DUF3971-AsmA2 domains protein low > 61
Escherichia coli Nissle 1917 0.31 ECOLIN_RS02340 diguanylate cyclase AdrA 0.07 ECOLIN_RS18600 AsmA2 domain-containing protein YhdP low > 55
Escherichia coli ECRC62 0.31 BNILDI_22955 adrA diguanylate cyclase AdrA 0.07 BNILDI_01985 yhdP AsmA2 domain-containing protein YhdP low > 75
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_5860 Two-component response regulator 0.05 Pf1N1B4_1094 FIG005080: Possible exported protein low > 87
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3763 GGDEF domain protein 0.08 Psyr_4158 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3763 GGDEF domain protein 0.08 Psyr_4158 conserved hypothetical protein low > 86
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS19325 diguanylate cyclase 0.09 ABZR86_RS21725 YhdP family protein low > 74
Enterobacter sp. TBS_079 0.28 MPMX20_00975 putative diguanylate cyclase DgcC 0.07 MPMX20_04152 hypothetical protein low > 85
Acidovorax sp. GW101-3H11 0.27 Ac3H11_3069 Response regulator containing a CheY-like receiver domain and a GGDEF domain 0.25 Ac3H11_1208 FIG005080: Possible exported protein low > 79
Enterobacter asburiae PDN3 0.26 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain 0.07 EX28DRAFT_3296 TIGR02099 family protein low > 76
Klebsiella michiganensis M5al 0.25 BWI76_RS21800 MASE2 domain/diguanylate cyclase 0.07 BWI76_RS25475 TIGR02099 family protein low > 92
Rahnella sp. WP5 0.23 EX31_RS22990 diguanylate cyclase 0.06 EX31_RS12260 AsmA2 domain-containing protein low > 89

Not shown: 4 genomes with orthologs for HSERO_RS16875 only; 22 genomes with orthologs for HSERO_RS07145 only