Conservation of cofitness between HSERO_RS16690 and HSERO_RS03725 in Herbaspirillum seropedicae SmR1

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16690 C4-dicarboxylate ABC transporter permease 1.0 HSERO_RS03725 type VI secretion protein 0.43 1
Bosea sp. OAE506 0.58 ABIE41_RS07770 tripartite tricarboxylate transporter permease 0.16 ABIE41_RS14390 type VI secretion system baseplate subunit TssG low > 77
Pseudomonas stutzeri RCH2 0.31 Psest_0370 Uncharacterized protein conserved in bacteria 0.13 Psest_0126 type VI secretion protein, VC_A0111 family low > 67
Azospirillum sp. SherDot2 0.30 MPMX19_03913 hypothetical protein 0.12 MPMX19_03418 hypothetical protein low > 112
Escherichia fergusonii Becca 0.29 EFB2_04789 hypothetical protein 0.13 EFB2_03815 hypothetical protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_3377 Tricarboxylate transport membrane protein TctA 0.18 Pf1N1B4_2057 Uncharacterized protein ImpH/VasB low > 87
Marinobacter adhaerens HP15 0.26 HP15_2659 Citrate uptake transporter, large transmembrane component TctA (from data) 0.15 HP15_3472 protein containing DUF1305 low > 73
Ralstonia solanacearum GMI1000 0.26 RS_RS03985 tripartite tricarboxylate transporter permease 0.45 RS_RS20695 type VI secretion system baseplate subunit TssG low > 80
Ralstonia solanacearum PSI07 0.26 RPSI07_RS20030 tripartite tricarboxylate transporter permease 0.47 RPSI07_RS02945 type VI secretion system baseplate subunit TssG low > 81
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS07140 tripartite tricarboxylate transporter permease 0.19 PFLU_RS29655 type VI secretion system baseplate subunit TssG low > 109
Pseudomonas simiae WCS417 0.26 PS417_07065 tripartite tricarboxylate transporter TctA 0.18 PS417_27975 type VI secretion protein low > 88
Pseudomonas fluorescens SBW25 0.26 PFLU_RS07140 tripartite tricarboxylate transporter permease 0.19 PFLU_RS29655 type VI secretion system baseplate subunit TssG low > 109
Pseudomonas putida KT2440 0.26 PP_1416 putative Tricarboxylate transport protein TctA 0.28 PP_3096 conserved protein of unknown function low > 96
Ralstonia solanacearum UW163 0.25 UW163_RS00380 tripartite tricarboxylate transporter permease 0.45 UW163_RS19145 type VI secretion system baseplate subunit TssG — —
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS13190 tripartite tricarboxylate transporter permease 0.45 RALBFv3_RS20030 type VI secretion system baseplate subunit TssG low > 76
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_17570 tripartite tricarboxylate transporter TctA 0.18 AO353_09615 type VI secretion protein low > 101
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_3968 Protein of unknown function DUF112 0.27 Psyr_4957 Protein of unknown function DUF1305 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_3968 Protein of unknown function DUF112 0.27 Psyr_4957 Protein of unknown function DUF1305 low > 86
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_04625 tripartite tricarboxylate transporter TctA 0.18 AO356_12250 type VI secretion protein low > 104
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_06715 tripartite tricarboxylate transporter permease 0.11 CSW01_14570 type VI secretion system baseplate subunit TssG low > 62
Pseudomonas sp. RS175 0.25 PFR28_00679 hypothetical protein 0.18 PFR28_04463 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_2770 Tricarboxylate transport membrane protein TctA 0.18 Pf6N2E2_4328 Uncharacterized protein ImpH/VasB low > 103
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS09270 tripartite tricarboxylate transporter permease 0.47 ABZR87_RS20215 type VI secretion system baseplate subunit TssG low > 80
Dickeya dianthicola ME23 0.25 DZA65_RS15405 tripartite tricarboxylate transporter permease 0.13 DZA65_RS08560 type VI secretion system baseplate subunit TssG 0.40 5
Dickeya dadantii 3937 0.25 DDA3937_RS14500 tripartite tricarboxylate transporter permease 0.12 DDA3937_RS07035 type VI secretion system baseplate subunit TssG low > 74
Pantoea sp. MT58 0.24 IAI47_06200 tripartite tricarboxylate transporter permease 0.15 IAI47_11585 type VI secretion system baseplate subunit TssG low > 76
Dickeya dianthicola 67-19 0.24 HGI48_RS14470 tripartite tricarboxylate transporter permease 0.13 HGI48_RS07965 type VI secretion system baseplate subunit TssG low > 71
Serratia liquefaciens MT49 0.24 IAI46_17890 tripartite tricarboxylate transporter permease 0.12 IAI46_05555 type VI secretion system baseplate subunit TssG low > 86
Pseudomonas sp. S08-1 0.23 OH686_19985 Tripartite tricarboxylate transporter TctA family 0.13 OH686_12820 T6SS component TssG (ImpH/VasB) low > 80

Not shown: 20 genomes with orthologs for HSERO_RS16690 only; 13 genomes with orthologs for HSERO_RS03725 only