Conservation of cofitness between HGI48_RS06620 and HGI48_RS20335 in Dickeya dianthicola 67-19

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS06620 galactose-1-epimerase 1.0 HGI48_RS20335 HTH-type transcriptional regulator HdfR 0.65 14
Dickeya dianthicola ME23 0.98 DZA65_RS06975 galactose-1-epimerase 1.00 DZA65_RS21375 HTH-type transcriptional regulator HdfR low > 75
Dickeya dadantii 3937 0.91 DDA3937_RS06600 galactose-1-epimerase 0.98 DDA3937_RS20190 HTH-type transcriptional regulator HdfR low > 74
Pectobacterium carotovorum WPP14 0.67 HER17_RS14770 galactose-1-epimerase 0.76 HER17_RS01040 HTH-type transcriptional regulator HdfR low > 75
Serratia liquefaciens MT49 0.63 IAI46_06420 galactose-1-epimerase 0.74 IAI46_24385 HTH-type transcriptional regulator HdfR low > 86
Rahnella sp. WP5 0.58 EX31_RS23565 galactose-1-epimerase 0.72 EX31_RS14970 HTH-type transcriptional regulator HdfR low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF649 Aldose 1-epimerase (EC 5.1.3.3) 0.62 GFF2907 HTH-type transcriptional regulator hdfR low > 78
Escherichia coli ECOR27 0.57 NOLOHH_23160 galM galactose-1-epimerase 0.61 NOLOHH_06810 hdfR HTH-type transcriptional regulator HdfR low > 75
Escherichia coli ECRC62 0.57 BNILDI_21155 galM galactose-1-epimerase 0.61 BNILDI_04715 hdfR HTH-type transcriptional regulator HdfR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02957 Aldose 1-epimerase 0.61 OHPLBJKB_04288 HTH-type transcriptional regulator HdfR low > 73
Escherichia coli ECOR38 0.57 HEPCGN_01545 galM galactose-1-epimerase 0.61 HEPCGN_13385 hdfR HTH-type transcriptional regulator HdfR low > 87
Escherichia coli BW25113 0.57 b0756 galM galactose-1-epimerase (mutarotase) (NCBI) 0.61 b4480 hdfR transcriptional regulator HdfR (NCBI) low > 76
Escherichia fergusonii Becca 0.57 EFB2_03350 Aldose 1-epimerase 0.61 EFB2_04871 HTH-type transcriptional regulator HdfR low > 86
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04025 galactose-1-epimerase 0.61 ECOLIN_RS21630 HTH-type transcriptional regulator HdfR low > 55
Erwinia tracheiphila SCR3 0.57 LU632_RS15915 galM galactose-1-epimerase 0.69 LU632_RS24450 hdfR HTH-type transcriptional regulator HdfR low > 74
Escherichia coli ECRC98 0.57 JDDGAC_10385 galM galactose-1-epimerase 0.61 JDDGAC_18295 hdfR HTH-type transcriptional regulator HdfR low > 86
Escherichia coli ECRC100 0.57 OKFHMN_06730 galM galactose-1-epimerase 0.61 OKFHMN_14675 hdfR HTH-type transcriptional regulator HdfR low > 80
Escherichia coli ECRC99 0.57 KEDOAH_21235 galM galactose-1-epimerase 0.61 KEDOAH_13475 hdfR HTH-type transcriptional regulator HdfR — —
Escherichia coli ECRC101 0.57 MCAODC_25950 galM galactose-1-epimerase 0.61 MCAODC_05180 hdfR HTH-type transcriptional regulator HdfR low > 87
Escherichia coli ECRC102 0.57 NIAGMN_04780 galM galactose-1-epimerase 0.61 NIAGMN_12430 hdfR HTH-type transcriptional regulator HdfR — —
Pantoea sp. MT58 0.57 IAI47_13595 galactose-1-epimerase 0.69 IAI47_01000 HTH-type transcriptional regulator HdfR low > 76
Klebsiella michiganensis M5al 0.56 BWI76_RS08610 galactose-1-epimerase 0.61 BWI76_RS00940 transcriptional regulator HdfR low > 92
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2239 galactose mutarotase 0.62 EX28DRAFT_4436 Transcriptional regulator low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_01383 Aldose 1-epimerase 0.62 MPMX20_04505 HTH-type transcriptional regulator HdfR low > 85
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_07995 galactose-1-epimerase 0.31 CSW01_19195 LysR family transcriptional regulator low > 62
Shewanella oneidensis MR-1 0.28 SO0693 galM aldose 1-epimerase (NCBI ptt file) 0.37 SO2202 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.28 Shewana3_3579 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.36 Shewana3_2403 LysR family transcriptional regulator (RefSeq) low > 73
Pseudomonas sp. RS175 0.25 PFR28_01305 Aldose 1-epimerase 0.19 PFR28_01360 HTH-type transcriptional regulator HdfR low > 88
Shewanella amazonensis SB2B 0.25 Sama_0535 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.34 Sama_1997 LysR family transcriptional regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.24 Shew_3272 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.28 Shew_2897 LysR family transcriptional regulator (RefSeq) low > 60
Azospirillum sp. SherDot2 0.24 MPMX19_06214 Aldose 1-epimerase 0.19 MPMX19_03737 HTH-type transcriptional regulator HdfR low > 112
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_01315 aldose epimerase 0.20 AO356_00585 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_2135 Aldose 1-epimerase (EC 5.1.3.3) 0.20 Pf6N2E2_2079 HTH-type transcriptional regulator hdfR low > 103
Pseudomonas simiae WCS417 0.24 PS417_11040 aldose epimerase 0.19 PS417_17700 LysR family transcriptional regulator low > 88
Variovorax sp. OAS795 0.23 ABID97_RS06780 aldose epimerase family protein 0.22 ABID97_RS24430 LysR family transcriptional regulator low > 91
Sinorhizobium meliloti 1021 0.23 SMc03798 aldose 1-epimerase 0.20 SMc02596 transcriptional regulator low > 103
Alteromonas macleodii MIT1002 0.22 MIT1002_00187 Aldose 1-epimerase precursor 0.24 MIT1002_02368 HTH-type transcriptional activator AllS low > 70
Dinoroseobacter shibae DFL-12 0.16 Dshi_2683 Aldose 1-epimerase (RefSeq) 0.21 Dshi_2990 transcriptional regulator, LysR family (RefSeq) low > 64

Not shown: 34 genomes with orthologs for HGI48_RS06620 only; 6 genomes with orthologs for HGI48_RS20335 only